Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3392 and Psyr_3393 overlap by 4 nucleotides Psyr_3393 and Psyr_3394 are separated by 189 nucleotides Psyr_3394 and Psyr_3395 overlap by 1 nucleotides Psyr_3395 and Psyr_3396 are separated by 21 nucleotides
Psyr_3392: Psyr_3392 - Cytochrome c-type biogenesis protein CcmB, at 4,050,093 to 4,050,764
_3392
Psyr_3393: Psyr_3393 - Heme exporter protein CcmA, at 4,050,761 to 4,051,408
_3393
Psyr_3394: Psyr_3394 - conserved hypothetical protein, at 4,051,598 to 4,053,223
_3394
Psyr_3395: Psyr_3395 - FlhB domain protein, at 4,053,223 to 4,053,546
_3395
Psyr_3396: Psyr_3396 - DNA replication and repair protein RecR, at 4,053,568 to 4,054,170
_3396
Position (kb) 4051
4052
4053
4054 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4051.458 kb on - strand at 4051.458 kb on - strand at 4051.458 kb on - strand at 4051.458 kb on - strand at 4051.491 kb on - strand at 4051.500 kb on - strand at 4051.546 kb on - strand at 4051.546 kb on - strand at 4051.546 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4051.548 kb on - strand at 4052.064 kb on - strand, within Psyr_3394 at 4052.166 kb on + strand, within Psyr_3394 at 4052.166 kb on + strand, within Psyr_3394 at 4052.167 kb on - strand, within Psyr_3394 at 4052.167 kb on - strand, within Psyr_3394 at 4052.167 kb on - strand, within Psyr_3394 at 4052.558 kb on + strand, within Psyr_3394 at 4053.024 kb on + strand, within Psyr_3394 at 4053.024 kb on + strand, within Psyr_3394 at 4053.024 kb on + strand, within Psyr_3394 at 4053.025 kb on - strand, within Psyr_3394 at 4053.052 kb on - strand, within Psyr_3394 at 4053.052 kb on - strand, within Psyr_3394 at 4053.101 kb on + strand at 4053.268 kb on + strand, within Psyr_3395 at 4053.268 kb on + strand, within Psyr_3395 at 4053.269 kb on - strand, within Psyr_3395 at 4053.269 kb on - strand, within Psyr_3395 at 4053.364 kb on + strand, within Psyr_3395 at 4053.407 kb on + strand, within Psyr_3395 at 4053.417 kb on + strand, within Psyr_3395 at 4053.417 kb on + strand, within Psyr_3395 at 4053.541 kb on + strand at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.707 kb on + strand, within Psyr_3396 at 4053.708 kb on - strand, within Psyr_3396 at 4053.708 kb on - strand, within Psyr_3396 at 4053.708 kb on - strand, within Psyr_3396 at 4053.863 kb on + strand, within Psyr_3396 at 4053.864 kb on - strand, within Psyr_3396 at 4053.897 kb on - strand, within Psyr_3396 at 4053.897 kb on - strand, within Psyr_3396
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 4,051,458 - -0.2 4,051,458 - +0.2 4,051,458 - +0.7 4,051,458 - -0.7 4,051,491 - -0.2 4,051,500 - -0.1 4,051,546 - -1.9 4,051,546 - -2.0 4,051,546 - -1.7 4,051,548 - -0.7 4,051,548 - -0.6 4,051,548 - -0.5 4,051,548 - +0.4 4,051,548 - -0.0 4,051,548 - +2.5 4,051,548 - -0.3 4,051,548 - -1.6 4,051,548 - -1.6 4,051,548 - -0.5 4,051,548 - -0.2 4,051,548 - +0.2 4,051,548 - -1.2 4,051,548 - +0.1 4,051,548 - +0.4 4,051,548 - +1.8 4,051,548 - +0.9 4,051,548 - -0.5 4,052,064 - Psyr_3394 0.29 +0.4 4,052,166 + Psyr_3394 0.35 -0.2 4,052,166 + Psyr_3394 0.35 +1.1 4,052,167 - Psyr_3394 0.35 -0.6 4,052,167 - Psyr_3394 0.35 +1.0 4,052,167 - Psyr_3394 0.35 +1.1 4,052,558 + Psyr_3394 0.59 -0.4 4,053,024 + Psyr_3394 0.88 +1.5 4,053,024 + Psyr_3394 0.88 -0.6 4,053,024 + Psyr_3394 0.88 +1.4 4,053,025 - Psyr_3394 0.88 -0.9 4,053,052 - Psyr_3394 0.89 +1.5 4,053,052 - Psyr_3394 0.89 +1.1 4,053,101 + -0.6 4,053,268 + Psyr_3395 0.14 +2.0 4,053,268 + Psyr_3395 0.14 -0.3 4,053,269 - Psyr_3395 0.14 -1.0 4,053,269 - Psyr_3395 0.14 -0.2 4,053,364 + Psyr_3395 0.44 +3.3 4,053,407 + Psyr_3395 0.57 +0.2 4,053,417 + Psyr_3395 0.60 +0.0 4,053,417 + Psyr_3395 0.60 -1.7 4,053,541 + +0.3 4,053,707 + Psyr_3396 0.23 +0.8 4,053,707 + Psyr_3396 0.23 -0.2 4,053,707 + Psyr_3396 0.23 -0.4 4,053,707 + Psyr_3396 0.23 +0.7 4,053,707 + Psyr_3396 0.23 +0.6 4,053,707 + Psyr_3396 0.23 +0.9 4,053,707 + Psyr_3396 0.23 +0.0 4,053,708 - Psyr_3396 0.23 -0.8 4,053,708 - Psyr_3396 0.23 +0.2 4,053,708 - Psyr_3396 0.23 -1.0 4,053,863 + Psyr_3396 0.49 +0.2 4,053,864 - Psyr_3396 0.49 +0.9 4,053,897 - Psyr_3396 0.55 -2.3 4,053,897 - Psyr_3396 0.55 -1.8
Or see this region's nucleotide sequence