Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3373

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3371 and Psyr_3372 overlap by 4 nucleotidesPsyr_3372 and Psyr_3373 are separated by 74 nucleotidesPsyr_3373 and Psyr_3374 are separated by 170 nucleotidesPsyr_3374 and Psyr_3375 overlap by 22 nucleotides Psyr_3371: Psyr_3371 - Oxidoreductase, molybdopterin binding protein, at 4,030,704 to 4,031,474 _3371 Psyr_3372: Psyr_3372 - conserved hypothetical protein, at 4,031,471 to 4,032,091 _3372 Psyr_3373: Psyr_3373 - conserved hypothetical protein, at 4,032,166 to 4,032,771 _3373 Psyr_3374: Psyr_3374 - Heavy metal response regulator, at 4,032,942 to 4,033,631 _3374 Psyr_3375: Psyr_3375 - Heavy metal sensor kinase, at 4,033,610 to 4,034,998 _3375 Position (kb) 4032 4033Strain fitness (log2 ratio) -2 -1 0 1 2at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.176 kb on + strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.177 kb on - strand, within Psyr_3371at 4031.228 kb on + strand, within Psyr_3371at 4031.230 kb on + strand, within Psyr_3371at 4031.230 kb on + strand, within Psyr_3371at 4031.230 kb on + strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.231 kb on - strand, within Psyr_3371at 4031.453 kb on + strandat 4031.453 kb on + strandat 4031.459 kb on + strandat 4031.533 kb on + strand, within Psyr_3372at 4031.534 kb on - strand, within Psyr_3372at 4031.607 kb on - strand, within Psyr_3372at 4031.699 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.724 kb on + strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.725 kb on - strand, within Psyr_3372at 4031.871 kb on + strand, within Psyr_3372at 4031.872 kb on - strand, within Psyr_3372at 4031.872 kb on - strand, within Psyr_3372at 4031.872 kb on - strand, within Psyr_3372at 4031.994 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.019 kb on + strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.020 kb on - strand, within Psyr_3372at 4032.167 kb on + strandat 4032.167 kb on + strandat 4032.167 kb on + strandat 4032.167 kb on + strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.168 kb on - strandat 4032.238 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.341 kb on + strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.342 kb on - strand, within Psyr_3373at 4032.609 kb on + strand, within Psyr_3373at 4032.750 kb on + strandat 4032.751 kb on - strandat 4032.751 kb on - strandat 4032.751 kb on - strandat 4032.753 kb on + strandat 4032.753 kb on + strandat 4032.775 kb on + strandat 4032.776 kb on - strandat 4032.829 kb on + strandat 4032.829 kb on + strandat 4032.829 kb on + strandat 4032.829 kb on + strandat 4032.830 kb on - strandat 4032.830 kb on - strandat 4032.830 kb on - strandat 4032.888 kb on - strandat 4032.947 kb on + strandat 4032.955 kb on + strandat 4032.956 kb on - strandat 4032.956 kb on - strandat 4033.230 kb on + strand, within Psyr_3374at 4033.301 kb on - strand, within Psyr_3374at 4033.442 kb on - strand, within Psyr_3374at 4033.442 kb on - strand, within Psyr_3374at 4033.442 kb on - strand, within Psyr_3374at 4033.442 kb on - strand, within Psyr_3374at 4033.590 kb on + strandat 4033.590 kb on + strandat 4033.591 kb on - strandat 4033.694 kb on + strandat 4033.695 kb on - strandat 4033.695 kb on - strandat 4033.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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4,031,176 + Psyr_3371 0.61 -2.0
4,031,176 + Psyr_3371 0.61 -0.1
4,031,176 + Psyr_3371 0.61 +0.7
4,031,176 + Psyr_3371 0.61 +0.9
4,031,176 + Psyr_3371 0.61 -0.6
4,031,177 - Psyr_3371 0.61 +0.5
4,031,177 - Psyr_3371 0.61 -0.3
4,031,177 - Psyr_3371 0.61 +1.1
4,031,177 - Psyr_3371 0.61 -0.3
4,031,228 + Psyr_3371 0.68 -0.2
4,031,230 + Psyr_3371 0.68 -0.4
4,031,230 + Psyr_3371 0.68 +0.0
4,031,230 + Psyr_3371 0.68 -0.2
4,031,231 - Psyr_3371 0.68 +0.3
4,031,231 - Psyr_3371 0.68 +0.0
4,031,231 - Psyr_3371 0.68 +0.5
4,031,231 - Psyr_3371 0.68 -0.7
4,031,453 + -0.3
4,031,453 + -0.8
4,031,459 + -2.5
4,031,533 + Psyr_3372 0.10 +0.1
4,031,534 - Psyr_3372 0.10 +0.8
4,031,607 - Psyr_3372 0.22 -1.1
4,031,699 + Psyr_3372 0.37 -0.3
4,031,724 + Psyr_3372 0.41 -0.8
4,031,724 + Psyr_3372 0.41 -0.0
4,031,724 + Psyr_3372 0.41 +0.6
4,031,724 + Psyr_3372 0.41 +0.2
4,031,724 + Psyr_3372 0.41 +0.8
4,031,724 + Psyr_3372 0.41 +0.6
4,031,725 - Psyr_3372 0.41 +1.1
4,031,725 - Psyr_3372 0.41 -1.5
4,031,725 - Psyr_3372 0.41 -0.3
4,031,725 - Psyr_3372 0.41 -0.1
4,031,725 - Psyr_3372 0.41 +1.5
4,031,725 - Psyr_3372 0.41 +1.4
4,031,871 + Psyr_3372 0.64 +1.5
4,031,872 - Psyr_3372 0.65 -1.6
4,031,872 - Psyr_3372 0.65 +0.7
4,031,872 - Psyr_3372 0.65 +0.5
4,031,994 + Psyr_3372 0.84 -1.9
4,032,019 + Psyr_3372 0.88 -0.9
4,032,019 + Psyr_3372 0.88 +0.9
4,032,019 + Psyr_3372 0.88 +0.5
4,032,019 + Psyr_3372 0.88 -1.0
4,032,019 + Psyr_3372 0.88 +0.3
4,032,019 + Psyr_3372 0.88 -0.3
4,032,019 + Psyr_3372 0.88 +0.5
4,032,020 - Psyr_3372 0.88 -0.8
4,032,020 - Psyr_3372 0.88 -0.1
4,032,020 - Psyr_3372 0.88 +1.1
4,032,020 - Psyr_3372 0.88 -1.2
4,032,020 - Psyr_3372 0.88 -0.8
4,032,167 + +1.1
4,032,167 + -0.2
4,032,167 + +0.4
4,032,167 + +0.5
4,032,168 - -0.6
4,032,168 - +0.5
4,032,168 - +2.2
4,032,168 - +0.4
4,032,238 + Psyr_3373 0.12 +1.7
4,032,341 + Psyr_3373 0.29 +1.8
4,032,341 + Psyr_3373 0.29 -0.1
4,032,341 + Psyr_3373 0.29 +2.1
4,032,341 + Psyr_3373 0.29 +0.5
4,032,341 + Psyr_3373 0.29 -0.4
4,032,342 - Psyr_3373 0.29 +0.9
4,032,342 - Psyr_3373 0.29 +0.9
4,032,342 - Psyr_3373 0.29 +0.1
4,032,342 - Psyr_3373 0.29 +0.4
4,032,342 - Psyr_3373 0.29 +1.5
4,032,609 + Psyr_3373 0.73 +2.1
4,032,750 + -0.5
4,032,751 - -0.5
4,032,751 - +1.1
4,032,751 - -1.2
4,032,753 + -0.1
4,032,753 + -0.1
4,032,775 + +1.8
4,032,776 - +1.9
4,032,829 + -0.2
4,032,829 + -0.5
4,032,829 + -0.5
4,032,829 + +1.5
4,032,830 - -0.1
4,032,830 - +2.5
4,032,830 - +0.4
4,032,888 - +0.5
4,032,947 + -1.1
4,032,955 + -0.0
4,032,956 - +1.7
4,032,956 - +0.5
4,033,230 + Psyr_3374 0.42 +0.5
4,033,301 - Psyr_3374 0.52 -1.3
4,033,442 - Psyr_3374 0.72 -0.5
4,033,442 - Psyr_3374 0.72 -0.1
4,033,442 - Psyr_3374 0.72 -1.6
4,033,442 - Psyr_3374 0.72 +1.0
4,033,590 + -0.1
4,033,590 + +0.3
4,033,591 - +1.4
4,033,694 + +1.5
4,033,695 - -0.3
4,033,695 - -0.1
4,033,700 + -0.3

Or see this region's nucleotide sequence