Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3053

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3052 and Psyr_3053 overlap by 4 nucleotidesPsyr_3053 and Psyr_3054 are separated by 146 nucleotides Psyr_3052: Psyr_3052 - Na+/solute symporter, at 3,649,676 to 3,651,205 _3052 Psyr_3053: Psyr_3053 - conserved hypothetical protein, at 3,651,202 to 3,651,462 _3053 Psyr_3054: Psyr_3054 - Choline/ethanolamine kinase:Aminoglycoside phosphotransferase, at 3,651,609 to 3,652,544 _3054 Position (kb) 3651 3652Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3650.406 kb on + strand, within Psyr_3052at 3650.406 kb on + strand, within Psyr_3052at 3650.407 kb on - strand, within Psyr_3052at 3650.407 kb on - strand, within Psyr_3052at 3650.407 kb on - strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.475 kb on + strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.476 kb on - strand, within Psyr_3052at 3650.491 kb on + strand, within Psyr_3052at 3650.492 kb on - strand, within Psyr_3052at 3650.600 kb on + strand, within Psyr_3052at 3650.600 kb on + strand, within Psyr_3052at 3650.600 kb on + strand, within Psyr_3052at 3650.600 kb on + strand, within Psyr_3052at 3650.600 kb on + strand, within Psyr_3052at 3650.601 kb on - strand, within Psyr_3052at 3650.601 kb on - strand, within Psyr_3052at 3650.601 kb on - strand, within Psyr_3052at 3650.601 kb on - strand, within Psyr_3052at 3650.601 kb on - strand, within Psyr_3052at 3650.601 kb on - strand, within Psyr_3052at 3650.604 kb on + strand, within Psyr_3052at 3650.605 kb on - strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.622 kb on + strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.623 kb on - strand, within Psyr_3052at 3650.922 kb on + strand, within Psyr_3052at 3650.923 kb on - strand, within Psyr_3052at 3650.923 kb on - strand, within Psyr_3052at 3650.923 kb on - strand, within Psyr_3052at 3650.950 kb on - strand, within Psyr_3052at 3651.120 kb on + strandat 3651.174 kb on + strandat 3651.174 kb on + strandat 3651.175 kb on - strandat 3651.175 kb on - strandat 3651.254 kb on + strand, within Psyr_3053at 3651.254 kb on + strand, within Psyr_3053at 3651.254 kb on + strand, within Psyr_3053at 3651.255 kb on - strand, within Psyr_3053at 3651.255 kb on - strand, within Psyr_3053at 3651.401 kb on + strand, within Psyr_3053at 3651.401 kb on + strand, within Psyr_3053at 3651.402 kb on - strand, within Psyr_3053at 3651.402 kb on - strand, within Psyr_3053at 3651.498 kb on + strandat 3651.559 kb on + strandat 3651.568 kb on - strandat 3651.568 kb on - strandat 3651.686 kb on - strandat 3651.691 kb on + strandat 3651.692 kb on - strandat 3651.814 kb on + strand, within Psyr_3054at 3651.815 kb on - strand, within Psyr_3054at 3651.815 kb on - strand, within Psyr_3054at 3651.815 kb on - strand, within Psyr_3054at 3651.907 kb on + strand, within Psyr_3054at 3652.030 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.185 kb on + strand, within Psyr_3054at 3652.186 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.382 kb on - strand, within Psyr_3054at 3652.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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3,650,406 + Psyr_3052 0.48 -1.3
3,650,406 + Psyr_3052 0.48 -0.3
3,650,407 - Psyr_3052 0.48 +0.7
3,650,407 - Psyr_3052 0.48 +0.0
3,650,407 - Psyr_3052 0.48 +0.4
3,650,475 + Psyr_3052 0.52 +0.9
3,650,475 + Psyr_3052 0.52 -1.1
3,650,475 + Psyr_3052 0.52 -0.8
3,650,475 + Psyr_3052 0.52 -0.1
3,650,475 + Psyr_3052 0.52 -1.0
3,650,475 + Psyr_3052 0.52 -1.0
3,650,475 + Psyr_3052 0.52 +0.2
3,650,475 + Psyr_3052 0.52 -0.8
3,650,475 + Psyr_3052 0.52 +0.6
3,650,476 - Psyr_3052 0.52 +0.1
3,650,476 - Psyr_3052 0.52 -1.2
3,650,476 - Psyr_3052 0.52 -0.3
3,650,476 - Psyr_3052 0.52 +0.4
3,650,476 - Psyr_3052 0.52 -2.2
3,650,476 - Psyr_3052 0.52 +1.0
3,650,476 - Psyr_3052 0.52 +0.2
3,650,476 - Psyr_3052 0.52 -0.4
3,650,476 - Psyr_3052 0.52 -0.8
3,650,476 - Psyr_3052 0.52 +0.5
3,650,491 + Psyr_3052 0.53 +1.4
3,650,492 - Psyr_3052 0.53 +0.2
3,650,600 + Psyr_3052 0.60 -3.7
3,650,600 + Psyr_3052 0.60 -1.3
3,650,600 + Psyr_3052 0.60 +0.0
3,650,600 + Psyr_3052 0.60 +0.2
3,650,600 + Psyr_3052 0.60 -1.0
3,650,601 - Psyr_3052 0.60 -0.1
3,650,601 - Psyr_3052 0.60 -0.6
3,650,601 - Psyr_3052 0.60 +1.4
3,650,601 - Psyr_3052 0.60 +0.7
3,650,601 - Psyr_3052 0.60 +0.2
3,650,601 - Psyr_3052 0.60 +0.2
3,650,604 + Psyr_3052 0.61 -0.6
3,650,605 - Psyr_3052 0.61 -1.6
3,650,622 + Psyr_3052 0.62 -0.3
3,650,622 + Psyr_3052 0.62 -1.1
3,650,622 + Psyr_3052 0.62 -0.8
3,650,622 + Psyr_3052 0.62 -0.5
3,650,622 + Psyr_3052 0.62 -0.4
3,650,622 + Psyr_3052 0.62 +0.9
3,650,622 + Psyr_3052 0.62 +0.1
3,650,622 + Psyr_3052 0.62 -1.1
3,650,623 - Psyr_3052 0.62 +0.9
3,650,623 - Psyr_3052 0.62 +0.4
3,650,623 - Psyr_3052 0.62 -0.6
3,650,623 - Psyr_3052 0.62 -0.3
3,650,623 - Psyr_3052 0.62 -0.0
3,650,623 - Psyr_3052 0.62 +1.0
3,650,623 - Psyr_3052 0.62 +0.3
3,650,623 - Psyr_3052 0.62 -0.2
3,650,623 - Psyr_3052 0.62 +0.4
3,650,922 + Psyr_3052 0.81 +0.8
3,650,923 - Psyr_3052 0.82 +1.4
3,650,923 - Psyr_3052 0.82 +0.6
3,650,923 - Psyr_3052 0.82 -0.8
3,650,950 - Psyr_3052 0.83 -0.9
3,651,120 + +0.5
3,651,174 + -0.4
3,651,174 + -2.6
3,651,175 - -0.6
3,651,175 - -0.6
3,651,254 + Psyr_3053 0.20 -0.9
3,651,254 + Psyr_3053 0.20 +0.8
3,651,254 + Psyr_3053 0.20 -0.0
3,651,255 - Psyr_3053 0.20 -1.0
3,651,255 - Psyr_3053 0.20 +3.6
3,651,401 + Psyr_3053 0.76 +0.7
3,651,401 + Psyr_3053 0.76 +0.7
3,651,402 - Psyr_3053 0.77 +0.1
3,651,402 - Psyr_3053 0.77 +0.6
3,651,498 + +0.4
3,651,559 + +0.3
3,651,568 - +1.2
3,651,568 - -0.8
3,651,686 - -0.6
3,651,691 + -0.4
3,651,692 - +0.0
3,651,814 + Psyr_3054 0.22 -2.3
3,651,815 - Psyr_3054 0.22 +0.3
3,651,815 - Psyr_3054 0.22 -1.6
3,651,815 - Psyr_3054 0.22 +3.6
3,651,907 + Psyr_3054 0.32 +1.4
3,652,030 + Psyr_3054 0.45 -0.6
3,652,185 + Psyr_3054 0.62 -0.6
3,652,185 + Psyr_3054 0.62 -0.6
3,652,185 + Psyr_3054 0.62 +0.7
3,652,185 + Psyr_3054 0.62 +1.8
3,652,185 + Psyr_3054 0.62 -0.6
3,652,186 - Psyr_3054 0.62 -0.3
3,652,382 - Psyr_3054 0.83 -0.1
3,652,382 - Psyr_3054 0.83 +0.2
3,652,382 - Psyr_3054 0.83 -0.4
3,652,382 - Psyr_3054 0.83 +0.1
3,652,451 - +1.8

Or see this region's nucleotide sequence