Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2254
Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | KB with Rotenone 0.125 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,618,257 | + | Psyr_2253 | 0.15 | -1.0 | |
2,618,464 | + | Psyr_2253 | 0.34 | +1.2 | |
2,618,464 | + | Psyr_2253 | 0.34 | +0.1 | |
2,618,465 | - | Psyr_2253 | 0.34 | +0.8 | |
2,618,904 | + | Psyr_2253 | 0.75 | +0.7 | |
2,619,098 | - | -1.6 | |||
2,619,098 | - | +0.7 | |||
2,619,098 | - | +0.8 | |||
2,619,225 | + | -0.1 | |||
2,619,225 | + | -1.5 | |||
2,619,226 | - | +0.3 | |||
2,619,573 | + | Psyr_2254 | 0.45 | -1.6 | |
2,619,574 | - | Psyr_2254 | 0.45 | +0.6 | |
2,619,654 | + | Psyr_2254 | 0.54 | -1.8 | |
2,619,717 | + | Psyr_2254 | 0.61 | -0.3 | |
2,619,717 | + | Psyr_2254 | 0.61 | -0.9 | |
2,619,718 | - | Psyr_2254 | 0.62 | -1.5 | |
2,619,718 | - | Psyr_2254 | 0.62 | -0.3 | |
2,619,747 | + | Psyr_2254 | 0.65 | -1.2 | |
2,619,748 | - | Psyr_2254 | 0.65 | +0.1 | |
2,619,748 | - | Psyr_2254 | 0.65 | +1.8 | |
2,619,847 | - | Psyr_2254 | 0.76 | -1.2 | |
2,620,146 | - | Psyr_2255 | 0.11 | -1.0 | |
2,620,146 | - | Psyr_2255 | 0.11 | -1.1 | |
2,620,326 | - | Psyr_2255 | 0.33 | -0.2 | |
2,620,713 | + | Psyr_2255 | 0.80 | +1.1 | |
2,620,994 | + | Psyr_2256 | 0.11 | +0.4 |
Or see this region's nucleotide sequence