Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2238

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2237 and Psyr_2238 are separated by 18 nucleotidesPsyr_2238 and Psyr_2239 are separated by 97 nucleotides Psyr_2237: Psyr_2237 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 2,599,432 to 2,601,417 _2237 Psyr_2238: Psyr_2238 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 2,601,436 to 2,602,356 _2238 Psyr_2239: Psyr_2239 - DNA/RNA non-specific endonuclease, at 2,602,454 to 2,603,398 _2239 Position (kb) 2601 2602 2603Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2600.496 kb on - strand, within Psyr_2237at 2600.542 kb on + strand, within Psyr_2237at 2601.518 kb on + strandat 2601.532 kb on + strand, within Psyr_2238at 2601.532 kb on + strand, within Psyr_2238at 2601.532 kb on + strand, within Psyr_2238at 2601.533 kb on - strand, within Psyr_2238at 2601.533 kb on - strand, within Psyr_2238at 2601.533 kb on - strand, within Psyr_2238at 2601.533 kb on - strand, within Psyr_2238at 2601.535 kb on - strand, within Psyr_2238at 2601.582 kb on - strand, within Psyr_2238at 2601.874 kb on + strand, within Psyr_2238at 2601.874 kb on + strand, within Psyr_2238at 2601.874 kb on + strand, within Psyr_2238at 2601.874 kb on + strand, within Psyr_2238at 2601.875 kb on - strand, within Psyr_2238at 2601.875 kb on - strand, within Psyr_2238at 2601.875 kb on - strand, within Psyr_2238at 2602.326 kb on + strandat 2602.327 kb on - strandat 2602.662 kb on + strand, within Psyr_2239at 2602.662 kb on + strand, within Psyr_2239at 2602.662 kb on + strand, within Psyr_2239at 2602.662 kb on + strand, within Psyr_2239at 2602.662 kb on + strand, within Psyr_2239at 2602.662 kb on + strand, within Psyr_2239at 2602.663 kb on - strand, within Psyr_2239at 2602.663 kb on - strandat 2602.824 kb on + strand, within Psyr_2239at 2602.824 kb on + strand, within Psyr_2239at 2602.825 kb on - strand, within Psyr_2239at 2602.825 kb on - strand, within Psyr_2239at 2602.825 kb on - strand, within Psyr_2239at 2602.933 kb on + strand, within Psyr_2239at 2602.984 kb on - strand, within Psyr_2239at 2602.984 kb on - strand, within Psyr_2239at 2602.984 kb on - strand, within Psyr_2239at 2602.984 kb on - strand, within Psyr_2239at 2603.060 kb on + strand, within Psyr_2239at 2603.061 kb on - strand, within Psyr_2239at 2603.061 kb on - strand, within Psyr_2239at 2603.094 kb on + strand, within Psyr_2239at 2603.095 kb on - strand, within Psyr_2239at 2603.143 kb on - strandat 2603.143 kb on - strand, within Psyr_2239

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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2,600,496 - Psyr_2237 0.54 +0.5
2,600,542 + Psyr_2237 0.56 -0.7
2,601,518 + +1.3
2,601,532 + Psyr_2238 0.10 +1.0
2,601,532 + Psyr_2238 0.10 -0.1
2,601,532 + Psyr_2238 0.10 +1.5
2,601,533 - Psyr_2238 0.11 +1.5
2,601,533 - Psyr_2238 0.11 +0.9
2,601,533 - Psyr_2238 0.11 +0.6
2,601,533 - Psyr_2238 0.11 +3.5
2,601,535 - Psyr_2238 0.11 -0.6
2,601,582 - Psyr_2238 0.16 +2.6
2,601,874 + Psyr_2238 0.48 +1.2
2,601,874 + Psyr_2238 0.48 -1.0
2,601,874 + Psyr_2238 0.48 +1.3
2,601,874 + Psyr_2238 0.48 +1.3
2,601,875 - Psyr_2238 0.48 -0.9
2,601,875 - Psyr_2238 0.48 +0.7
2,601,875 - Psyr_2238 0.48 +0.5
2,602,326 + +0.8
2,602,327 - +0.8
2,602,662 + Psyr_2239 0.22 +1.5
2,602,662 + Psyr_2239 0.22 +0.7
2,602,662 + Psyr_2239 0.22 -1.8
2,602,662 + Psyr_2239 0.22 +0.7
2,602,662 + Psyr_2239 0.22 -1.8
2,602,662 + Psyr_2239 0.22 -0.8
2,602,663 - Psyr_2239 0.22 -0.2
2,602,663 - -0.1
2,602,824 + Psyr_2239 0.39 -0.4
2,602,824 + Psyr_2239 0.39 -0.1
2,602,825 - Psyr_2239 0.39 -1.2
2,602,825 - Psyr_2239 0.39 -0.5
2,602,825 - Psyr_2239 0.39 -1.8
2,602,933 + Psyr_2239 0.51 -1.0
2,602,984 - Psyr_2239 0.56 +1.7
2,602,984 - Psyr_2239 0.56 -0.1
2,602,984 - Psyr_2239 0.56 -1.6
2,602,984 - Psyr_2239 0.56 -0.4
2,603,060 + Psyr_2239 0.64 +3.3
2,603,061 - Psyr_2239 0.64 +0.3
2,603,061 - Psyr_2239 0.64 +2.1
2,603,094 + Psyr_2239 0.68 +0.4
2,603,095 - Psyr_2239 0.68 +0.9
2,603,143 - -1.5
2,603,143 - Psyr_2239 0.73 +0.4

Or see this region's nucleotide sequence