Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1740

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1738 and Psyr_1739 overlap by 8 nucleotidesPsyr_1739 and Psyr_1740 are separated by 10 nucleotidesPsyr_1740 and Psyr_1741 are separated by 12 nucleotidesPsyr_1741 and Psyr_1742 are separated by 84 nucleotides Psyr_1738: Psyr_1738 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 1,975,218 to 1,976,333 _1738 Psyr_1739: Psyr_1739 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 1,976,326 to 1,977,192 _1739 Psyr_1740: Psyr_1740 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 1,977,203 to 1,978,003 _1740 Psyr_1741: Psyr_1741 - conserved hypothetical protein, at 1,978,016 to 1,978,288 _1741 Psyr_1742: Psyr_1742 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 1,978,373 to 1,980,145 _1742 Position (kb) 1977 1978 1979Strain fitness (log2 ratio) -2 -1 0 1 2at 1976.277 kb on + strandat 1976.277 kb on + strandat 1976.277 kb on + strandat 1976.277 kb on + strandat 1976.278 kb on - strandat 1976.278 kb on - strandat 1976.289 kb on + strandat 1976.289 kb on + strandat 1976.290 kb on - strandat 1976.426 kb on - strand, within Psyr_1739at 1976.539 kb on + strand, within Psyr_1739at 1976.540 kb on - strand, within Psyr_1739at 1976.552 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.752 kb on + strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.753 kb on - strand, within Psyr_1739at 1976.759 kb on - strand, within Psyr_1739at 1976.759 kb on - strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.872 kb on + strand, within Psyr_1739at 1976.873 kb on - strand, within Psyr_1739at 1976.873 kb on - strand, within Psyr_1739at 1976.873 kb on - strand, within Psyr_1739at 1976.875 kb on + strand, within Psyr_1739at 1976.876 kb on - strand, within Psyr_1739at 1976.925 kb on + strand, within Psyr_1739at 1976.926 kb on - strand, within Psyr_1739at 1976.926 kb on - strand, within Psyr_1739at 1976.926 kb on - strand, within Psyr_1739at 1976.998 kb on + strand, within Psyr_1739at 1976.998 kb on + strand, within Psyr_1739at 1976.999 kb on - strand, within Psyr_1739at 1976.999 kb on - strand, within Psyr_1739at 1977.014 kb on + strand, within Psyr_1739at 1977.124 kb on + strandat 1977.124 kb on + strandat 1977.124 kb on + strandat 1977.160 kb on + strandat 1977.160 kb on + strandat 1977.236 kb on + strandat 1977.236 kb on + strandat 1977.237 kb on - strandat 1977.263 kb on + strandat 1977.264 kb on - strandat 1977.350 kb on + strand, within Psyr_1740at 1977.350 kb on + strand, within Psyr_1740at 1977.350 kb on + strand, within Psyr_1740at 1977.350 kb on + strand, within Psyr_1740at 1977.351 kb on - strand, within Psyr_1740at 1977.405 kb on - strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.407 kb on + strand, within Psyr_1740at 1977.408 kb on - strand, within Psyr_1740at 1977.408 kb on - strand, within Psyr_1740at 1977.566 kb on + strand, within Psyr_1740at 1977.567 kb on - strand, within Psyr_1740at 1977.567 kb on - strand, within Psyr_1740at 1977.583 kb on - strand, within Psyr_1740at 1977.583 kb on - strand, within Psyr_1740at 1977.698 kb on + strand, within Psyr_1740at 1977.698 kb on + strand, within Psyr_1740at 1977.698 kb on + strand, within Psyr_1740at 1977.699 kb on - strand, within Psyr_1740at 1977.699 kb on - strand, within Psyr_1740at 1978.190 kb on + strand, within Psyr_1741at 1978.287 kb on - strandat 1978.347 kb on + strandat 1978.347 kb on + strandat 1978.347 kb on + strandat 1978.348 kb on - strandat 1978.372 kb on + strandat 1978.372 kb on + strandat 1978.373 kb on - strandat 1978.373 kb on - strandat 1978.373 kb on - strandat 1978.402 kb on + strandat 1978.402 kb on + strandat 1978.403 kb on - strandat 1978.403 kb on - strandat 1978.403 kb on - strandat 1978.467 kb on - strandat 1978.625 kb on + strand, within Psyr_1742at 1978.626 kb on - strand, within Psyr_1742at 1978.752 kb on - strand, within Psyr_1742at 1978.901 kb on - strand, within Psyr_1742at 1978.925 kb on + strand, within Psyr_1742at 1978.926 kb on - strand, within Psyr_1742

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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1,976,277 + +0.4
1,976,277 + +0.8
1,976,277 + -0.3
1,976,277 + +1.9
1,976,278 - +0.3
1,976,278 - -0.5
1,976,289 + +0.9
1,976,289 + +0.1
1,976,290 - -0.8
1,976,426 - Psyr_1739 0.12 +0.8
1,976,539 + Psyr_1739 0.25 +0.7
1,976,540 - Psyr_1739 0.25 +0.1
1,976,552 + Psyr_1739 0.26 -0.2
1,976,752 + Psyr_1739 0.49 +1.6
1,976,752 + Psyr_1739 0.49 +0.1
1,976,752 + Psyr_1739 0.49 +1.8
1,976,752 + Psyr_1739 0.49 -0.4
1,976,753 - Psyr_1739 0.49 +0.2
1,976,753 - Psyr_1739 0.49 -0.4
1,976,753 - Psyr_1739 0.49 +0.8
1,976,753 - Psyr_1739 0.49 +1.0
1,976,759 - Psyr_1739 0.50 -0.3
1,976,759 - Psyr_1739 0.50 +0.6
1,976,872 + Psyr_1739 0.63 +0.5
1,976,872 + Psyr_1739 0.63 -0.5
1,976,872 + Psyr_1739 0.63 +0.2
1,976,872 + Psyr_1739 0.63 -0.7
1,976,872 + Psyr_1739 0.63 +0.3
1,976,872 + Psyr_1739 0.63 +1.7
1,976,873 - Psyr_1739 0.63 -0.4
1,976,873 - Psyr_1739 0.63 -0.3
1,976,873 - Psyr_1739 0.63 -1.8
1,976,875 + Psyr_1739 0.63 +1.1
1,976,876 - Psyr_1739 0.63 +0.5
1,976,925 + Psyr_1739 0.69 -0.3
1,976,926 - Psyr_1739 0.69 -0.1
1,976,926 - Psyr_1739 0.69 +0.0
1,976,926 - Psyr_1739 0.69 -0.9
1,976,998 + Psyr_1739 0.78 +0.0
1,976,998 + Psyr_1739 0.78 +0.8
1,976,999 - Psyr_1739 0.78 +0.5
1,976,999 - Psyr_1739 0.78 -0.0
1,977,014 + Psyr_1739 0.79 -0.5
1,977,124 + -0.3
1,977,124 + -2.5
1,977,124 + -1.2
1,977,160 + +0.4
1,977,160 + +0.6
1,977,236 + +0.3
1,977,236 + +0.2
1,977,237 - +0.6
1,977,263 + -0.7
1,977,264 - -0.3
1,977,350 + Psyr_1740 0.18 +0.5
1,977,350 + Psyr_1740 0.18 +0.5
1,977,350 + Psyr_1740 0.18 +0.3
1,977,350 + Psyr_1740 0.18 +0.1
1,977,351 - Psyr_1740 0.18 -0.5
1,977,405 - Psyr_1740 0.25 +0.9
1,977,407 + Psyr_1740 0.25 +0.7
1,977,407 + Psyr_1740 0.25 +1.5
1,977,407 + Psyr_1740 0.25 +1.1
1,977,407 + Psyr_1740 0.25 -0.3
1,977,407 + Psyr_1740 0.25 -0.6
1,977,408 - Psyr_1740 0.26 +0.7
1,977,408 - Psyr_1740 0.26 +1.3
1,977,566 + Psyr_1740 0.45 -0.6
1,977,567 - Psyr_1740 0.45 -0.5
1,977,567 - Psyr_1740 0.45 +0.5
1,977,583 - Psyr_1740 0.47 +0.5
1,977,583 - Psyr_1740 0.47 +0.2
1,977,698 + Psyr_1740 0.62 +1.1
1,977,698 + Psyr_1740 0.62 +1.8
1,977,698 + Psyr_1740 0.62 +0.6
1,977,699 - Psyr_1740 0.62 -1.9
1,977,699 - Psyr_1740 0.62 +0.7
1,978,190 + Psyr_1741 0.64 -0.3
1,978,287 - -1.5
1,978,347 + +0.4
1,978,347 + -1.3
1,978,347 + +0.2
1,978,348 - +0.4
1,978,372 + +0.1
1,978,372 + +0.2
1,978,373 - -0.4
1,978,373 - -0.4
1,978,373 - -0.8
1,978,402 + -0.5
1,978,402 + +1.7
1,978,403 - -0.7
1,978,403 - -0.4
1,978,403 - +0.1
1,978,467 - -2.6
1,978,625 + Psyr_1742 0.14 -0.7
1,978,626 - Psyr_1742 0.14 +2.1
1,978,752 - Psyr_1742 0.21 -0.2
1,978,901 - Psyr_1742 0.30 -1.2
1,978,925 + Psyr_1742 0.31 -0.8
1,978,926 - Psyr_1742 0.31 -0.3

Or see this region's nucleotide sequence