Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1473

Experiment: KB with Rotenone 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rotenone 0.125 mg/ml
1,658,702	+				-1.3
1,658,702	+				+0.9
1,658,702	+				-0.8
1,658,702	+				-0.3
1,658,703	-				-0.3
1,658,703	-				-0.2
1,658,703	-				-0.3
1,658,703	-				-0.3
1,658,727	-				-0.0
1,658,745	-				-0.4
1,658,768	+				-1.4
1,658,769	-				+0.2
1,658,783	-				-2.4
1,658,836	+				-0.3
1,658,837	-				+0.7
1,658,837	-				-1.3
1,658,843	+				-0.2
1,658,843	+				+0.5
1,658,844	-				+0.0
1,658,847	-				+0.8
1,658,863	+				-0.6
1,658,904	+				-0.4
1,658,904	+				+1.0
1,658,909	-				+0.1
1,658,920	+				-0.7
1,658,920	+				-0.7
1,658,972	+				+0.8
1,658,973	-				+0.9
1,659,000	-				+0.0
1,659,000	-				+0.1
1,659,032	+				+0.9
1,659,032	+				-0.9
1,659,032	+				+0.7
1,659,032	+				+1.1
1,659,032	+				+0.7
1,659,032	+				-3.5
1,659,033	-				+0.9
1,659,033	-				-0.1
1,659,033	-				-2.6
1,659,033	-				-1.6
1,659,049	+				+0.4
1,659,049	+				+1.0
1,659,050	-				+1.7
1,659,050	-				+0.0
1,659,067	+				+0.5
1,659,068	-				-0.3
1,659,068	-				-0.6
1,659,085	-				-0.3
1,659,148	+				+0.4
1,659,148	+				+0.4
1,659,148	+				+0.5
1,659,148	+				-1.0
1,659,148	+				-0.4
1,659,148	+				-0.9
1,659,148	+				-0.1
1,659,149	-				-1.0
1,659,149	-				+0.1
1,659,149	-				-1.0
1,659,149	-				-0.5
1,659,149	-				-1.7
1,659,149	-				-0.6
1,659,190	+				+0.2
1,659,191	-				-0.0
1,659,381	+				+1.3
1,659,381	+				+0.1
1,659,381	+				-0.3
1,659,381	+				-1.1
1,659,382	-				+0.7
1,659,414	+				+1.3
1,659,414	+				+0.2
1,659,414	+				-0.5
1,659,415	-				+0.7
1,659,435	+				-0.4
1,659,436	-				+0.4
1,659,454	+				-0.8
1,659,496	+				+0.2
1,659,519	+				+2.7
1,659,519	+				-0.2
1,659,520	-				+2.7
1,659,520	-				-0.8
1,659,604	-				-2.0
1,659,606	+				-0.1
1,659,606	+				-0.4
1,659,607	-				+0.1
1,659,640	+				+1.6
1,659,734	-				+0.9
1,659,787	+				+0.8
1,659,864	+		Psyr_1473	0.10	-0.6
1,659,864	+		Psyr_1473	0.10	+0.2
1,659,864	+		Psyr_1473	0.10	-0.1
1,659,865	-		Psyr_1473	0.10	+0.4
1,659,865	-		Psyr_1473	0.10	-0.9
1,659,865	-		Psyr_1473	0.10	+0.3
1,659,865	-		Psyr_1473	0.10	+0.1
1,659,865	-		Psyr_1473	0.10	+0.5
1,659,865	-		Psyr_1473	0.10	-0.5
1,659,865	-		Psyr_1473	0.10	-0.7
1,659,946	+		Psyr_1473	0.14	-1.3
1,659,947	-		Psyr_1473	0.15	-0.1
1,659,963	-		Psyr_1473	0.15	-0.8
1,660,010	+		Psyr_1473	0.18	+1.4
1,660,073	+		Psyr_1473	0.21	-1.6
1,660,198	+		Psyr_1473	0.27	+0.4
1,660,198	+		Psyr_1473	0.27	-0.6
1,660,198	+		Psyr_1473	0.27	+1.2
1,660,198	+		Psyr_1473	0.27	-0.1
1,660,198	+		Psyr_1473	0.27	+0.7
1,660,198	+		Psyr_1473	0.27	+1.3
1,660,198	+		Psyr_1473	0.27	-0.9
1,660,198	+		Psyr_1473	0.27	+0.2
1,660,198	+		Psyr_1473	0.27	-0.0
1,660,198	+		Psyr_1473	0.27	-2.6
1,660,198	+		Psyr_1473	0.27	-0.5
1,660,199	-		Psyr_1473	0.27	+0.7
1,660,199	-		Psyr_1473	0.27	+0.7
1,660,199	-		Psyr_1473	0.27	-0.7
1,660,199	-		Psyr_1473	0.27	+1.0
1,660,209	+		Psyr_1473	0.27	-0.7
1,660,209	+		Psyr_1473	0.27	-0.5
1,660,210	-		Psyr_1473	0.28	-0.7
1,660,318	+		Psyr_1473	0.33	-0.4
1,660,318	+		Psyr_1473	0.33	-0.9
1,660,318	+		Psyr_1473	0.33	-0.9
1,660,434	+		Psyr_1473	0.39	+0.9
1,660,434	+		Psyr_1473	0.39	+0.0
1,660,435	-		Psyr_1473	0.39	+1.3
1,660,485	+		Psyr_1473	0.41	+0.3
1,660,486	-		Psyr_1473	0.41	-0.4
1,660,486	-		Psyr_1473	0.41	+1.1
1,660,719	+		Psyr_1473	0.53	+0.4
1,660,720	-		Psyr_1473	0.53	+0.1
1,660,757	+		Psyr_1473	0.55	-1.2
1,660,757	+		Psyr_1473	0.55	+0.8
1,660,758	-		Psyr_1473	0.55	+0.9
1,660,758	-		Psyr_1473	0.55	+0.3
1,660,758	-		Psyr_1473	0.55	+1.6
1,660,758	-		Psyr_1473	0.55	+0.2
1,660,861	+		Psyr_1473	0.60	+0.1
1,660,861	+		Psyr_1473	0.60	+3.4
1,660,861	+		Psyr_1473	0.60	+0.6
1,660,862	-		Psyr_1473	0.60	-0.9
1,660,862	-		Psyr_1473	0.60	+0.5
1,660,862	-		Psyr_1473	0.60	-0.8
1,660,892	-		Psyr_1473	0.61	+0.7
1,660,892	-		Psyr_1473	0.61	-1.5
1,660,892	-		Psyr_1473	0.61	+0.5
1,660,955	+		Psyr_1473	0.64	-1.1
1,660,955	+		Psyr_1473	0.64	+0.6
1,660,956	-		Psyr_1473	0.64	+1.2
1,660,956	-		Psyr_1473	0.64	+0.0
1,660,956	-		Psyr_1473	0.64	+0.5
1,660,962	+		Psyr_1473	0.65	+0.7
1,660,962	+		Psyr_1473	0.65	+2.9
1,660,962	+		Psyr_1473	0.65	+0.3
1,661,057	-		Psyr_1473	0.69	+0.9
1,661,174	-		Psyr_1473	0.75	-1.3
1,661,328	+		Psyr_1473	0.83	+3.1
1,661,328	+		Psyr_1473	0.83	-0.2
1,661,328	+		Psyr_1473	0.83	+0.3
1,661,664	+				-0.5
1,661,664	+				+0.2
1,661,664	+				+0.1
1,661,665	-				-0.0
1,661,701	+				+0.7
1,661,721	+				+0.0
1,661,721	+				-0.3
1,661,721	+				+0.6
1,661,817	+				+0.1
1,661,827	+				+1.2
1,661,827	+				+2.0
1,661,828	-				+0.4
1,661,828	-				-0.0
1,661,831	+				-0.7
1,661,831	+				+1.2
1,661,831	+				+1.2
1,661,831	+				-2.5
1,661,831	+				-0.6
1,661,831	+				+0.2
1,661,832	-				+0.7
1,661,832	-				+1.6
1,661,837	+				-0.9
1,661,838	-				-0.8
1,661,838	-				+0.7
1,661,923	+				-0.3
1,661,924	-				-0.2
1,661,924	-				+0.3
1,661,963	+				+1.4
1,661,964	-				+1.2
1,661,990	+				-0.2
1,661,991	-				+0.7
1,661,991	-				-2.1
1,662,044	+				+3.3
1,662,089	-				+1.0
1,662,103	+				-0.5
1,662,104	-				+0.1
1,662,109	+				-0.4
1,662,110	-				-0.9
1,662,138	+		Psyr_1474	0.11	-0.5
1,662,138	+		Psyr_1474	0.11	-2.5
1,662,138	+		Psyr_1474	0.11	-0.1
1,662,139	-		Psyr_1474	0.11	-0.2
1,662,139	-		Psyr_1474	0.11	+1.7
1,662,205	+		Psyr_1474	0.16	+0.0
1,662,206	-		Psyr_1474	0.16	+0.7
1,662,206	-		Psyr_1474	0.16	-0.2
1,662,253	+		Psyr_1474	0.19	+0.2
1,662,257	+		Psyr_1474	0.19	+0.2
1,662,258	-		Psyr_1474	0.19	-0.1
1,662,258	-		Psyr_1474	0.19	-1.6
1,662,316	+		Psyr_1474	0.23	-2.1
1,662,320	+		Psyr_1474	0.23	+0.7
1,662,341	-		Psyr_1474	0.24	-0.9
1,662,446	+		Psyr_1474	0.31	-0.7
1,662,447	-				+0.3
1,662,447	-		Psyr_1474	0.31	-0.3
1,662,504	+		Psyr_1474	0.35	+0.4
1,662,547	-				+0.7
1,662,633	+		Psyr_1474	0.43	+0.7
1,662,639	-		Psyr_1474	0.44	-1.5
1,662,639	-		Psyr_1474	0.44	-0.4
1,662,639	-		Psyr_1474	0.44	-1.3
1,662,640	+		Psyr_1474	0.44	-0.2
1,662,653	-		Psyr_1474	0.45	-1.9
1,662,670	+		Psyr_1474	0.46	+1.6
1,662,670	+		Psyr_1474	0.46	-0.6
1,662,671	-		Psyr_1474	0.46	-0.9
1,662,671	-		Psyr_1474	0.46	+0.4