Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1380

Experiment: KB with Rotenone 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rotenone 0.125 mg/ml
1,563,128	+		Psyr_1378	0.61	+0.7
1,563,129	-		Psyr_1378	0.61	+1.7
1,563,281	+		Psyr_1378	0.75	+1.9
1,563,281	+		Psyr_1378	0.75	-1.5
1,563,282	-		Psyr_1378	0.75	-0.0
1,563,282	-		Psyr_1378	0.75	-0.5
1,563,353	+		Psyr_1378	0.82	+0.3
1,563,517	+				-0.6
1,563,517	+				+0.7
1,563,517	+				-0.0
1,563,518	-				+1.4
1,563,518	-				+1.1
1,563,518	-				-2.3
1,563,518	-				+0.7
1,563,518	-				+0.9
1,563,518	-				+1.4
1,563,643	-		Psyr_1379	0.20	-1.7
1,563,784	-		Psyr_1379	0.50	+0.4
1,563,874	+		Psyr_1379	0.69	-3.5
1,563,956	-		Psyr_1379	0.87	+0.9
1,564,018	+				+0.6
1,564,018	+				+1.3
1,564,018	+				-0.3
1,564,018	+				+1.4
1,564,018	+				+1.2
1,564,018	+				+0.2
1,564,018	+				-1.5
1,564,018	+				-1.7
1,564,019	-				+0.4
1,564,019	-				-0.1
1,564,019	-				-0.4
1,564,019	-				-0.4
1,564,019	-				+1.3
1,564,019	-				+0.7
1,564,021	-				+1.0
1,564,032	+				+0.6
1,564,032	+				+0.6
1,564,104	+				-0.6
1,564,104	+				+0.3
1,564,104	+				-0.2
1,564,104	+				+0.9
1,564,104	+				-0.9
1,564,105	-				+0.4
1,564,105	-				-0.0
1,564,105	-				-0.0
1,564,105	-				-0.8
1,564,105	-				-0.6
1,564,105	-				+0.4
1,564,105	-				-1.0
1,564,105	-				+2.1
1,564,207	-		Psyr_1380	0.16	+1.1
1,564,298	-		Psyr_1380	0.24	+1.0
1,564,347	+		Psyr_1380	0.28	-0.3
1,564,348	-				+0.7
1,564,425	+		Psyr_1380	0.35	+1.6
1,564,425	+		Psyr_1380	0.35	+0.7
1,564,425	+		Psyr_1380	0.35	-1.6
1,564,426	-		Psyr_1380	0.35	-0.8
1,564,426	-		Psyr_1380	0.35	+3.3
1,564,426	-		Psyr_1380	0.35	-0.6
1,564,426	-		Psyr_1380	0.35	+1.2
1,564,502	+		Psyr_1380	0.42	-0.1
1,564,503	-		Psyr_1380	0.42	+0.8
1,564,535	+		Psyr_1380	0.45	+0.4
1,564,535	+		Psyr_1380	0.45	+0.7
1,564,536	-		Psyr_1380	0.45	+1.0
1,564,536	-		Psyr_1380	0.45	+0.7
1,564,674	-		Psyr_1380	0.58	+0.2
1,564,861	+		Psyr_1380	0.75	+0.5
1,564,910	+		Psyr_1380	0.79	-0.1
1,564,910	+		Psyr_1380	0.79	+1.2
1,564,910	+		Psyr_1380	0.79	+0.0
1,564,910	+		Psyr_1380	0.79	+0.3
1,564,911	-		Psyr_1380	0.79	-0.4
1,564,956	-		Psyr_1380	0.83	+0.2
1,565,023	-		Psyr_1380	0.89	-1.4
1,565,132	+				+0.0
1,565,132	+				-2.0
1,565,132	+				-0.7
1,565,132	+				+0.3
1,565,132	+				-0.2
1,565,132	+				+1.4
1,565,132	+				+0.7
1,565,132	+				+1.1
1,565,132	+				+0.3
1,565,132	+				-0.8
1,565,132	+				-0.1
1,565,133	-				+0.2
1,565,133	-				-0.4
1,565,133	-				+0.2
1,565,133	-				+0.4
1,565,133	-				+0.4
1,565,133	-				-0.8
1,565,133	-				+1.8
1,565,133	-				-0.7
1,565,133	-				+0.4
1,565,136	+				+0.2
1,565,136	+				-0.2
1,565,136	+				-0.7
1,565,136	+				-0.3
1,565,136	+				+0.3
1,565,136	+				+1.4
1,565,137	-				-1.2
1,565,137	-				+0.3
1,565,275	-				+0.7
1,565,320	+				-0.3
1,565,320	+				+0.4
1,565,320	+				+0.3
1,565,320	+				-0.3
1,565,320	+				+0.9
1,565,320	+				-0.3
1,565,320	+				+0.9
1,565,321	-				-0.1
1,565,321	-				+0.6
1,565,321	-				-1.4
1,565,321	-				+0.3
1,565,321	-				+1.0
1,565,321	-				-0.1
1,565,321	-				-1.3
1,565,321	-				+0.2
1,565,321	-				+0.6
1,565,338	+				-0.1
1,565,339	-				+3.2
1,565,352	+				-1.6
1,565,353	-				-3.2
1,565,353	-				-0.5
1,565,407	+		Psyr_1381	0.17	-0.8
1,565,407	+		Psyr_1381	0.17	-0.0
1,565,408	-		Psyr_1381	0.17	+2.3
1,565,422	+		Psyr_1381	0.20	-1.3
1,565,422	+		Psyr_1381	0.20	+0.1
1,565,422	+		Psyr_1381	0.20	-0.0
1,565,423	-		Psyr_1381	0.21	+1.2
1,565,423	-		Psyr_1381	0.21	-0.3
1,565,431	-		Psyr_1381	0.23	-0.5
1,565,585	-		Psyr_1381	0.59	+0.7
1,565,585	-		Psyr_1381	0.59	+1.7
1,565,755	-				-1.2
1,565,768	+				+3.5
1,565,768	+				+1.3
1,565,769	-				+0.7
1,565,769	-				+0.6
1,565,769	-				+1.1
1,565,851	+				+0.9
1,565,852	-				-0.1
1,565,852	-				+0.0
1,565,853	+				+0.7
1,565,853	+				+0.5
1,565,854	-				+1.3
1,565,854	-				+0.1
1,565,854	-				-0.1
1,565,854	-				+1.0
1,565,854	-				-1.2
1,565,854	-				+1.5
1,565,854	-				+1.1
1,565,937	+				-0.2
1,565,953	+				+0.5
1,565,983	+				+0.2
1,565,983	+				+0.9
1,565,983	+				-0.1
1,565,983	+				+0.4
1,565,983	+				+0.9
1,565,983	+				-0.1
1,565,983	+				-0.3
1,565,983	+				+0.1
1,565,983	+				+1.1
1,565,984	-				+0.3
1,565,984	-				+0.8
1,565,984	-				+0.5
1,565,984	-				-2.1
1,565,984	-				+0.2
1,565,984	-				+2.7
1,566,069	-				+1.0
1,566,069	-				-0.9
1,566,123	+		Psyr_1382	0.16	+0.2
1,566,123	+		Psyr_1382	0.16	-0.2
1,566,123	+		Psyr_1382	0.16	+0.4
1,566,123	+		Psyr_1382	0.16	+0.3
1,566,124	-		Psyr_1382	0.16	-0.3
1,566,124	-		Psyr_1382	0.16	-1.4
1,566,124	-		Psyr_1382	0.16	+0.1