Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1115

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1114 and Psyr_1115 overlap by 8 nucleotidesPsyr_1115 and Psyr_1116 are separated by 2 nucleotides Psyr_1114: Psyr_1114 - glucose ABC transporter membrane protein, at 1,262,693 to 1,263,601 _1114 Psyr_1115: Psyr_1115 - glucose ABC transporter membrane protein, at 1,263,594 to 1,264,439 _1115 Psyr_1116: Psyr_1116 - glucose ABC transporter ATP-binding protein, at 1,264,442 to 1,265,611 _1116 Position (kb) 1263 1264 1265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1262.672 kb on - strandat 1262.672 kb on - strandat 1262.673 kb on + strandat 1262.673 kb on + strandat 1262.673 kb on + strandat 1262.673 kb on + strandat 1262.674 kb on - strandat 1262.674 kb on - strandat 1262.787 kb on + strand, within Psyr_1114at 1262.787 kb on + strand, within Psyr_1114at 1262.787 kb on + strand, within Psyr_1114at 1262.801 kb on + strand, within Psyr_1114at 1262.802 kb on - strand, within Psyr_1114at 1262.802 kb on - strand, within Psyr_1114at 1262.808 kb on - strand, within Psyr_1114at 1262.861 kb on + strand, within Psyr_1114at 1262.861 kb on + strand, within Psyr_1114at 1262.861 kb on + strand, within Psyr_1114at 1262.862 kb on - strand, within Psyr_1114at 1262.862 kb on - strand, within Psyr_1114at 1262.862 kb on - strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.863 kb on + strand, within Psyr_1114at 1262.864 kb on - strand, within Psyr_1114at 1262.864 kb on - strand, within Psyr_1114at 1262.864 kb on - strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.037 kb on + strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.038 kb on - strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.041 kb on + strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.042 kb on - strand, within Psyr_1114at 1263.192 kb on - strand, within Psyr_1114at 1263.192 kb on - strand, within Psyr_1114at 1263.192 kb on - strand, within Psyr_1114at 1263.324 kb on - strand, within Psyr_1114at 1263.324 kb on - strand, within Psyr_1114at 1263.324 kb on - strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.473 kb on + strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.474 kb on - strand, within Psyr_1114at 1263.563 kb on + strandat 1263.563 kb on + strandat 1263.569 kb on + strandat 1263.599 kb on + strandat 1263.599 kb on + strandat 1263.646 kb on - strandat 1263.763 kb on + strand, within Psyr_1115at 1263.784 kb on + strand, within Psyr_1115at 1263.785 kb on - strand, within Psyr_1115at 1263.810 kb on + strand, within Psyr_1115at 1263.811 kb on - strand, within Psyr_1115at 1263.811 kb on - strand, within Psyr_1115at 1263.882 kb on + strand, within Psyr_1115at 1263.882 kb on + strand, within Psyr_1115at 1263.882 kb on + strand, within Psyr_1115at 1263.882 kb on + strand, within Psyr_1115at 1263.882 kb on + strand, within Psyr_1115at 1263.882 kb on + strand, within Psyr_1115at 1263.882 kb on + strand, within Psyr_1115at 1263.883 kb on - strand, within Psyr_1115at 1263.883 kb on - strand, within Psyr_1115at 1263.986 kb on + strand, within Psyr_1115at 1263.987 kb on - strand, within Psyr_1115at 1263.987 kb on - strand, within Psyr_1115at 1263.987 kb on - strand, within Psyr_1115at 1263.987 kb on - strand, within Psyr_1115at 1264.061 kb on + strand, within Psyr_1115at 1264.062 kb on - strand, within Psyr_1115at 1264.062 kb on - strand, within Psyr_1115at 1264.069 kb on + strand, within Psyr_1115at 1264.070 kb on - strand, within Psyr_1115at 1264.083 kb on + strand, within Psyr_1115at 1264.083 kb on + strand, within Psyr_1115at 1264.083 kb on + strand, within Psyr_1115at 1264.083 kb on + strand, within Psyr_1115at 1264.083 kb on + strand, within Psyr_1115at 1264.083 kb on + strand, within Psyr_1115at 1264.084 kb on - strand, within Psyr_1115at 1264.084 kb on - strand, within Psyr_1115at 1264.084 kb on - strand, within Psyr_1115at 1264.084 kb on - strand, within Psyr_1115at 1264.086 kb on + strand, within Psyr_1115at 1264.086 kb on + strand, within Psyr_1115at 1264.086 kb on + strand, within Psyr_1115at 1264.087 kb on - strand, within Psyr_1115at 1264.326 kb on + strand, within Psyr_1115at 1264.326 kb on + strand, within Psyr_1115at 1264.327 kb on - strand, within Psyr_1115at 1264.327 kb on - strand, within Psyr_1115at 1264.327 kb on - strand, within Psyr_1115at 1264.327 kb on - strand, within Psyr_1115at 1264.327 kb on - strand, within Psyr_1115at 1264.327 kb on - strand, within Psyr_1115at 1264.380 kb on + strandat 1264.381 kb on - strandat 1264.381 kb on - strandat 1264.381 kb on - strandat 1264.384 kb on + strandat 1264.398 kb on + strandat 1264.398 kb on + strandat 1264.398 kb on + strandat 1264.398 kb on + strandat 1264.398 kb on + strandat 1264.399 kb on - strandat 1264.399 kb on - strandat 1264.438 kb on - strandat 1264.438 kb on - strandat 1264.458 kb on + strandat 1264.459 kb on - strandat 1264.478 kb on + strandat 1264.479 kb on - strandat 1264.479 kb on - strandat 1264.479 kb on - strandat 1264.479 kb on - strandat 1264.697 kb on + strand, within Psyr_1116at 1264.698 kb on - strand, within Psyr_1116at 1264.698 kb on - strand, within Psyr_1116at 1264.698 kb on - strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.910 kb on + strand, within Psyr_1116at 1264.911 kb on - strand, within Psyr_1116at 1264.911 kb on - strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.012 kb on + strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.013 kb on - strand, within Psyr_1116at 1265.111 kb on + strand, within Psyr_1116at 1265.111 kb on + strand, within Psyr_1116at 1265.111 kb on + strand, within Psyr_1116at 1265.111 kb on + strand, within Psyr_1116at 1265.111 kb on + strand, within Psyr_1116at 1265.111 kb on + strand, within Psyr_1116at 1265.111 kb on + strand, within Psyr_1116at 1265.112 kb on - strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.314 kb on + strand, within Psyr_1116at 1265.315 kb on - strand, within Psyr_1116at 1265.315 kb on - strand, within Psyr_1116at 1265.315 kb on - strand, within Psyr_1116at 1265.315 kb on - strand, within Psyr_1116

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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1,262,672 - +1.7
1,262,672 - -1.5
1,262,673 + +0.2
1,262,673 + +0.3
1,262,673 + -1.5
1,262,673 + -1.1
1,262,674 - +0.2
1,262,674 - -2.0
1,262,787 + Psyr_1114 0.10 +1.0
1,262,787 + Psyr_1114 0.10 -0.2
1,262,787 + Psyr_1114 0.10 -1.0
1,262,801 + Psyr_1114 0.12 +0.3
1,262,802 - Psyr_1114 0.12 +0.8
1,262,802 - Psyr_1114 0.12 +0.5
1,262,808 - Psyr_1114 0.13 -0.1
1,262,861 + Psyr_1114 0.18 -0.9
1,262,861 + Psyr_1114 0.18 -0.2
1,262,861 + Psyr_1114 0.18 +1.5
1,262,862 - Psyr_1114 0.19 +0.1
1,262,862 - Psyr_1114 0.19 -0.4
1,262,862 - Psyr_1114 0.19 +1.6
1,262,863 + Psyr_1114 0.19 -0.2
1,262,863 + Psyr_1114 0.19 +0.0
1,262,863 + Psyr_1114 0.19 -0.6
1,262,863 + Psyr_1114 0.19 -1.1
1,262,863 + Psyr_1114 0.19 -0.5
1,262,863 + Psyr_1114 0.19 +0.8
1,262,864 - Psyr_1114 0.19 +1.2
1,262,864 - Psyr_1114 0.19 -0.9
1,262,864 - Psyr_1114 0.19 -2.0
1,263,037 + Psyr_1114 0.38 +1.0
1,263,037 + Psyr_1114 0.38 -1.3
1,263,037 + Psyr_1114 0.38 +0.5
1,263,037 + Psyr_1114 0.38 -1.2
1,263,037 + Psyr_1114 0.38 +0.0
1,263,038 - Psyr_1114 0.38 -1.0
1,263,038 - Psyr_1114 0.38 +1.2
1,263,038 - Psyr_1114 0.38 +1.3
1,263,038 - Psyr_1114 0.38 -0.6
1,263,038 - Psyr_1114 0.38 -1.9
1,263,038 - Psyr_1114 0.38 -0.1
1,263,038 - Psyr_1114 0.38 -1.5
1,263,041 + Psyr_1114 0.38 +0.4
1,263,041 + Psyr_1114 0.38 -0.3
1,263,041 + Psyr_1114 0.38 -0.2
1,263,041 + Psyr_1114 0.38 +0.5
1,263,041 + Psyr_1114 0.38 -0.5
1,263,041 + Psyr_1114 0.38 -0.7
1,263,041 + Psyr_1114 0.38 -1.5
1,263,041 + Psyr_1114 0.38 +2.8
1,263,041 + Psyr_1114 0.38 -0.2
1,263,041 + Psyr_1114 0.38 -0.2
1,263,042 - Psyr_1114 0.38 -1.0
1,263,042 - Psyr_1114 0.38 -0.2
1,263,042 - Psyr_1114 0.38 +1.6
1,263,042 - Psyr_1114 0.38 -0.2
1,263,042 - Psyr_1114 0.38 +0.8
1,263,042 - Psyr_1114 0.38 -0.1
1,263,042 - Psyr_1114 0.38 -0.4
1,263,042 - Psyr_1114 0.38 -0.1
1,263,042 - Psyr_1114 0.38 +0.8
1,263,042 - Psyr_1114 0.38 -0.4
1,263,192 - Psyr_1114 0.55 -0.4
1,263,192 - Psyr_1114 0.55 +0.2
1,263,192 - Psyr_1114 0.55 -1.5
1,263,324 - Psyr_1114 0.69 +0.3
1,263,324 - Psyr_1114 0.69 +0.1
1,263,324 - Psyr_1114 0.69 -0.2
1,263,473 + Psyr_1114 0.86 -0.0
1,263,473 + Psyr_1114 0.86 -0.5
1,263,473 + Psyr_1114 0.86 -0.9
1,263,473 + Psyr_1114 0.86 +1.7
1,263,474 - Psyr_1114 0.86 +0.8
1,263,474 - Psyr_1114 0.86 +0.3
1,263,474 - Psyr_1114 0.86 -0.1
1,263,474 - Psyr_1114 0.86 +1.5
1,263,563 + +1.8
1,263,563 + -0.0
1,263,569 + -1.2
1,263,599 + +1.4
1,263,599 + -0.9
1,263,646 - +0.1
1,263,763 + Psyr_1115 0.20 -0.4
1,263,784 + Psyr_1115 0.22 +2.9
1,263,785 - Psyr_1115 0.23 -0.2
1,263,810 + Psyr_1115 0.26 +0.8
1,263,811 - Psyr_1115 0.26 -0.4
1,263,811 - Psyr_1115 0.26 +0.7
1,263,882 + Psyr_1115 0.34 -0.4
1,263,882 + Psyr_1115 0.34 +0.3
1,263,882 + Psyr_1115 0.34 +0.0
1,263,882 + Psyr_1115 0.34 +0.3
1,263,882 + Psyr_1115 0.34 -1.5
1,263,882 + Psyr_1115 0.34 -0.5
1,263,882 + Psyr_1115 0.34 -0.3
1,263,883 - Psyr_1115 0.34 -0.1
1,263,883 - Psyr_1115 0.34 -0.2
1,263,986 + Psyr_1115 0.46 -0.4
1,263,987 - Psyr_1115 0.46 +0.9
1,263,987 - Psyr_1115 0.46 +0.8
1,263,987 - Psyr_1115 0.46 +0.4
1,263,987 - Psyr_1115 0.46 +1.0
1,264,061 + Psyr_1115 0.55 +0.4
1,264,062 - Psyr_1115 0.55 -0.4
1,264,062 - Psyr_1115 0.55 -0.4
1,264,069 + Psyr_1115 0.56 +0.2
1,264,070 - Psyr_1115 0.56 -0.7
1,264,083 + Psyr_1115 0.58 +0.8
1,264,083 + Psyr_1115 0.58 +0.8
1,264,083 + Psyr_1115 0.58 -1.0
1,264,083 + Psyr_1115 0.58 -0.5
1,264,083 + Psyr_1115 0.58 +0.3
1,264,083 + Psyr_1115 0.58 -0.8
1,264,084 - Psyr_1115 0.58 +1.2
1,264,084 - Psyr_1115 0.58 -0.9
1,264,084 - Psyr_1115 0.58 +0.6
1,264,084 - Psyr_1115 0.58 +0.5
1,264,086 + Psyr_1115 0.58 +0.4
1,264,086 + Psyr_1115 0.58 +0.3
1,264,086 + Psyr_1115 0.58 +0.3
1,264,087 - Psyr_1115 0.58 -0.3
1,264,326 + Psyr_1115 0.87 +1.0
1,264,326 + Psyr_1115 0.87 -0.4
1,264,327 - Psyr_1115 0.87 -0.8
1,264,327 - Psyr_1115 0.87 -0.6
1,264,327 - Psyr_1115 0.87 +0.0
1,264,327 - Psyr_1115 0.87 +0.6
1,264,327 - Psyr_1115 0.87 +0.3
1,264,327 - Psyr_1115 0.87 -0.0
1,264,380 + +2.1
1,264,381 - -1.0
1,264,381 - -0.5
1,264,381 - +0.3
1,264,384 + -2.9
1,264,398 + -1.0
1,264,398 + -1.2
1,264,398 + +0.4
1,264,398 + -0.8
1,264,398 + +0.4
1,264,399 - -1.5
1,264,399 - +0.2
1,264,438 - +2.1
1,264,438 - -0.7
1,264,458 + -0.6
1,264,459 - +0.8
1,264,478 + +1.0
1,264,479 - -1.0
1,264,479 - -0.8
1,264,479 - -0.0
1,264,479 - -0.1
1,264,697 + Psyr_1116 0.22 +0.7
1,264,698 - Psyr_1116 0.22 +0.6
1,264,698 - Psyr_1116 0.22 +0.3
1,264,698 - Psyr_1116 0.22 -0.0
1,264,910 + Psyr_1116 0.40 -1.5
1,264,910 + Psyr_1116 0.40 -0.4
1,264,910 + Psyr_1116 0.40 -0.1
1,264,910 + Psyr_1116 0.40 -0.3
1,264,910 + Psyr_1116 0.40 -0.8
1,264,910 + Psyr_1116 0.40 -0.1
1,264,910 + Psyr_1116 0.40 -0.9
1,264,910 + Psyr_1116 0.40 +1.0
1,264,910 + Psyr_1116 0.40 -0.7
1,264,911 - Psyr_1116 0.40 +1.1
1,264,911 - Psyr_1116 0.40 +0.2
1,265,012 + Psyr_1116 0.49 -0.9
1,265,012 + Psyr_1116 0.49 -0.2
1,265,012 + Psyr_1116 0.49 -0.4
1,265,012 + Psyr_1116 0.49 +0.9
1,265,012 + Psyr_1116 0.49 -0.1
1,265,012 + Psyr_1116 0.49 -0.6
1,265,012 + Psyr_1116 0.49 +2.7
1,265,012 + Psyr_1116 0.49 -0.6
1,265,012 + Psyr_1116 0.49 +0.2
1,265,012 + Psyr_1116 0.49 -1.0
1,265,013 - Psyr_1116 0.49 -0.7
1,265,013 - Psyr_1116 0.49 -1.7
1,265,013 - Psyr_1116 0.49 -1.1
1,265,013 - Psyr_1116 0.49 +0.3
1,265,013 - Psyr_1116 0.49 +0.3
1,265,013 - Psyr_1116 0.49 -0.7
1,265,013 - Psyr_1116 0.49 -0.8
1,265,013 - Psyr_1116 0.49 +0.9
1,265,013 - Psyr_1116 0.49 +1.3
1,265,013 - Psyr_1116 0.49 -0.5
1,265,013 - Psyr_1116 0.49 -0.6
1,265,013 - Psyr_1116 0.49 -0.2
1,265,013 - Psyr_1116 0.49 +1.6
1,265,013 - Psyr_1116 0.49 +0.8
1,265,111 + Psyr_1116 0.57 -0.4
1,265,111 + Psyr_1116 0.57 -0.7
1,265,111 + Psyr_1116 0.57 -0.6
1,265,111 + Psyr_1116 0.57 +0.3
1,265,111 + Psyr_1116 0.57 -0.0
1,265,111 + Psyr_1116 0.57 +0.7
1,265,111 + Psyr_1116 0.57 +0.2
1,265,112 - Psyr_1116 0.57 +0.4
1,265,314 + Psyr_1116 0.75 -1.1
1,265,314 + Psyr_1116 0.75 +1.0
1,265,314 + Psyr_1116 0.75 +0.2
1,265,314 + Psyr_1116 0.75 -0.8
1,265,314 + Psyr_1116 0.75 -0.2
1,265,314 + Psyr_1116 0.75 -0.7
1,265,314 + Psyr_1116 0.75 +0.2
1,265,314 + Psyr_1116 0.75 -1.6
1,265,315 - Psyr_1116 0.75 +3.1
1,265,315 - Psyr_1116 0.75 +1.1
1,265,315 - Psyr_1116 0.75 -0.3
1,265,315 - Psyr_1116 0.75 -0.1

Or see this region's nucleotide sequence