Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1109

Experiment: KB with Rotenone 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1108 and Psyr_1109 are separated by 219 nucleotidesPsyr_1109 and Psyr_1110 overlap by 4 nucleotides Psyr_1108: Psyr_1108 - glyceraldehyde-3-phosphate dehydrogenase, at 1,254,858 to 1,255,859 _1108 Psyr_1109: Psyr_1109 - 6-phosphogluconate dehydratase, at 1,256,079 to 1,257,905 _1109 Psyr_1110: Psyr_1110 - glucokinase, at 1,257,902 to 1,258,867 _1110 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1255.197 kb on + strand, within Psyr_1108at 1255.282 kb on + strand, within Psyr_1108at 1255.282 kb on + strand, within Psyr_1108at 1255.283 kb on - strand, within Psyr_1108at 1255.312 kb on + strand, within Psyr_1108at 1255.313 kb on - strand, within Psyr_1108at 1255.313 kb on - strand, within Psyr_1108at 1255.313 kb on - strand, within Psyr_1108at 1255.365 kb on + strand, within Psyr_1108at 1255.365 kb on + strand, within Psyr_1108at 1255.365 kb on + strand, within Psyr_1108at 1255.366 kb on - strand, within Psyr_1108at 1255.366 kb on - strand, within Psyr_1108at 1255.366 kb on - strand, within Psyr_1108at 1255.366 kb on - strand, within Psyr_1108at 1255.456 kb on + strand, within Psyr_1108at 1255.457 kb on - strand, within Psyr_1108at 1255.457 kb on - strand, within Psyr_1108at 1255.457 kb on - strand, within Psyr_1108at 1255.457 kb on - strand, within Psyr_1108at 1255.496 kb on + strand, within Psyr_1108at 1255.497 kb on - strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.637 kb on + strand, within Psyr_1108at 1255.637 kb on + strand, within Psyr_1108at 1255.638 kb on - strand, within Psyr_1108at 1255.701 kb on + strand, within Psyr_1108at 1255.702 kb on - strand, within Psyr_1108at 1255.702 kb on - strand, within Psyr_1108at 1255.702 kb on - strand, within Psyr_1108at 1255.702 kb on - strand, within Psyr_1108at 1255.794 kb on - strandat 1255.795 kb on + strandat 1255.795 kb on + strandat 1255.795 kb on + strandat 1255.795 kb on + strandat 1255.795 kb on + strandat 1255.796 kb on - strandat 1255.796 kb on - strandat 1255.796 kb on - strandat 1255.796 kb on - strandat 1255.796 kb on - strandat 1255.796 kb on - strandat 1255.796 kb on - strandat 1255.796 kb on - strandat 1255.806 kb on + strandat 1255.806 kb on + strandat 1255.859 kb on + strandat 1255.859 kb on + strandat 1255.860 kb on - strandat 1255.860 kb on - strandat 1255.959 kb on + strandat 1255.960 kb on - strandat 1256.055 kb on - strandat 1256.062 kb on - strandat 1256.101 kb on + strandat 1256.146 kb on - strandat 1256.298 kb on + strand, within Psyr_1109at 1256.298 kb on + strand, within Psyr_1109at 1256.298 kb on + strand, within Psyr_1109at 1256.299 kb on - strand, within Psyr_1109at 1256.299 kb on - strand, within Psyr_1109at 1256.362 kb on + strand, within Psyr_1109at 1256.363 kb on - strand, within Psyr_1109at 1256.363 kb on - strand, within Psyr_1109at 1256.363 kb on - strand, within Psyr_1109at 1256.507 kb on + strand, within Psyr_1109at 1256.507 kb on + strand, within Psyr_1109at 1256.507 kb on + strand, within Psyr_1109at 1256.507 kb on + strand, within Psyr_1109at 1256.508 kb on - strand, within Psyr_1109at 1256.508 kb on - strand, within Psyr_1109at 1256.508 kb on - strand, within Psyr_1109at 1256.508 kb on - strand, within Psyr_1109at 1256.508 kb on - strand, within Psyr_1109at 1256.508 kb on - strand, within Psyr_1109at 1256.656 kb on + strand, within Psyr_1109at 1256.657 kb on - strand, within Psyr_1109at 1256.828 kb on + strand, within Psyr_1109at 1256.828 kb on + strand, within Psyr_1109at 1256.828 kb on + strand, within Psyr_1109at 1256.828 kb on + strand, within Psyr_1109at 1256.828 kb on + strand, within Psyr_1109at 1256.829 kb on - strand, within Psyr_1109at 1256.879 kb on + strand, within Psyr_1109at 1256.879 kb on + strand, within Psyr_1109at 1256.880 kb on - strand, within Psyr_1109at 1256.880 kb on - strand, within Psyr_1109at 1257.087 kb on + strand, within Psyr_1109at 1257.108 kb on - strand, within Psyr_1109at 1257.219 kb on + strand, within Psyr_1109at 1257.389 kb on - strand, within Psyr_1109at 1257.724 kb on + strandat 1257.725 kb on - strandat 1257.725 kb on - strandat 1257.725 kb on - strandat 1257.725 kb on - strandat 1257.736 kb on + strandat 1257.736 kb on + strandat 1257.737 kb on - strandat 1257.737 kb on - strandat 1257.737 kb on - strandat 1257.878 kb on + strandat 1257.884 kb on + strandat 1257.885 kb on - strandat 1257.899 kb on + strandat 1257.899 kb on + strandat 1257.899 kb on + strandat 1257.900 kb on - strandat 1257.900 kb on - strandat 1257.900 kb on - strandat 1257.900 kb on - strandat 1257.900 kb on - strandat 1257.925 kb on + strandat 1257.926 kb on - strandat 1257.926 kb on - strandat 1257.926 kb on - strandat 1257.926 kb on - strandat 1257.927 kb on + strandat 1257.927 kb on + strandat 1257.927 kb on + strandat 1257.927 kb on + strandat 1257.928 kb on - strandat 1257.928 kb on - strandat 1257.928 kb on - strandat 1257.928 kb on - strandat 1258.034 kb on + strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.035 kb on - strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.077 kb on + strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strandat 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.078 kb on - strand, within Psyr_1110at 1258.248 kb on - strand, within Psyr_1110at 1258.499 kb on + strand, within Psyr_1110at 1258.676 kb on + strand, within Psyr_1110at 1258.676 kb on + strand, within Psyr_1110at 1258.676 kb on + strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.677 kb on - strand, within Psyr_1110at 1258.679 kb on - strand, within Psyr_1110at 1258.706 kb on - strand, within Psyr_1110at 1258.769 kb on + strand, within Psyr_1110at 1258.808 kb on + strandat 1258.879 kb on + strandat 1258.880 kb on - strandat 1258.880 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
remove
1,255,197 + Psyr_1108 0.34 -1.2
1,255,282 + Psyr_1108 0.42 -0.5
1,255,282 + Psyr_1108 0.42 +0.6
1,255,283 - Psyr_1108 0.42 +1.1
1,255,312 + Psyr_1108 0.45 -0.8
1,255,313 - Psyr_1108 0.45 -1.2
1,255,313 - Psyr_1108 0.45 -1.2
1,255,313 - Psyr_1108 0.45 -0.4
1,255,365 + Psyr_1108 0.51 -0.1
1,255,365 + Psyr_1108 0.51 -1.0
1,255,365 + Psyr_1108 0.51 -1.1
1,255,366 - Psyr_1108 0.51 -2.3
1,255,366 - Psyr_1108 0.51 +1.8
1,255,366 - Psyr_1108 0.51 -2.1
1,255,366 - Psyr_1108 0.51 -0.4
1,255,456 + Psyr_1108 0.60 -0.5
1,255,457 - Psyr_1108 0.60 -1.1
1,255,457 - Psyr_1108 0.60 +0.2
1,255,457 - Psyr_1108 0.60 -0.2
1,255,457 - Psyr_1108 0.60 -1.4
1,255,496 + Psyr_1108 0.64 -1.5
1,255,497 - Psyr_1108 0.64 -1.2
1,255,581 + Psyr_1108 0.72 -0.8
1,255,581 + Psyr_1108 0.72 -1.4
1,255,581 + Psyr_1108 0.72 +1.0
1,255,582 - Psyr_1108 0.72 -0.9
1,255,582 - Psyr_1108 0.72 -1.0
1,255,582 - Psyr_1108 0.72 -1.7
1,255,582 - Psyr_1108 0.72 -1.7
1,255,582 - Psyr_1108 0.72 +0.6
1,255,582 - Psyr_1108 0.72 -1.6
1,255,582 - Psyr_1108 0.72 -0.6
1,255,582 - Psyr_1108 0.72 -0.9
1,255,637 + Psyr_1108 0.78 -1.0
1,255,637 + Psyr_1108 0.78 -1.3
1,255,638 - Psyr_1108 0.78 +0.3
1,255,701 + Psyr_1108 0.84 -1.1
1,255,702 - Psyr_1108 0.84 -2.4
1,255,702 - Psyr_1108 0.84 -1.8
1,255,702 - Psyr_1108 0.84 -1.2
1,255,702 - Psyr_1108 0.84 +1.8
1,255,794 - -1.8
1,255,795 + -0.5
1,255,795 + -0.8
1,255,795 + -2.1
1,255,795 + -0.9
1,255,795 + -0.8
1,255,796 - -0.9
1,255,796 - -1.2
1,255,796 - +0.3
1,255,796 - -0.9
1,255,796 - -1.5
1,255,796 - -0.1
1,255,796 - -1.2
1,255,796 - -0.7
1,255,806 + -1.1
1,255,806 + -0.7
1,255,859 + +0.2
1,255,859 + +0.0
1,255,860 - +0.2
1,255,860 - -0.0
1,255,959 + -3.7
1,255,960 - +0.8
1,256,055 - -0.6
1,256,062 - +1.5
1,256,101 + +0.2
1,256,146 - +0.4
1,256,298 + Psyr_1109 0.12 -1.8
1,256,298 + Psyr_1109 0.12 +0.2
1,256,298 + Psyr_1109 0.12 +0.1
1,256,299 - Psyr_1109 0.12 +0.4
1,256,299 - Psyr_1109 0.12 +1.2
1,256,362 + Psyr_1109 0.15 -0.7
1,256,363 - Psyr_1109 0.16 -0.7
1,256,363 - Psyr_1109 0.16 +0.2
1,256,363 - Psyr_1109 0.16 -0.5
1,256,507 + Psyr_1109 0.23 -0.8
1,256,507 + Psyr_1109 0.23 +0.7
1,256,507 + Psyr_1109 0.23 +2.4
1,256,507 + Psyr_1109 0.23 -0.4
1,256,508 - Psyr_1109 0.23 -1.1
1,256,508 - Psyr_1109 0.23 -1.0
1,256,508 - Psyr_1109 0.23 +0.0
1,256,508 - Psyr_1109 0.23 -0.9
1,256,508 - Psyr_1109 0.23 -1.4
1,256,508 - Psyr_1109 0.23 -0.5
1,256,656 + Psyr_1109 0.32 -0.1
1,256,657 - Psyr_1109 0.32 -1.4
1,256,828 + Psyr_1109 0.41 -1.2
1,256,828 + Psyr_1109 0.41 +0.8
1,256,828 + Psyr_1109 0.41 +0.5
1,256,828 + Psyr_1109 0.41 -0.6
1,256,828 + Psyr_1109 0.41 -1.7
1,256,829 - Psyr_1109 0.41 +0.8
1,256,879 + Psyr_1109 0.44 -1.0
1,256,879 + Psyr_1109 0.44 -1.4
1,256,880 - Psyr_1109 0.44 -0.2
1,256,880 - Psyr_1109 0.44 -0.8
1,257,087 + Psyr_1109 0.55 +0.8
1,257,108 - Psyr_1109 0.56 +0.8
1,257,219 + Psyr_1109 0.62 +0.2
1,257,389 - Psyr_1109 0.72 +0.5
1,257,724 + -0.6
1,257,725 - -1.8
1,257,725 - -2.2
1,257,725 - +0.3
1,257,725 - -0.5
1,257,736 + -1.1
1,257,736 + +0.4
1,257,737 - -0.4
1,257,737 - -0.1
1,257,737 - +1.8
1,257,878 + +1.9
1,257,884 + -1.4
1,257,885 - -0.7
1,257,899 + +0.4
1,257,899 + +1.0
1,257,899 + +1.0
1,257,900 - +2.2
1,257,900 - -0.8
1,257,900 - -0.6
1,257,900 - -0.9
1,257,900 - -0.1
1,257,925 + +2.0
1,257,926 - -0.2
1,257,926 - -0.4
1,257,926 - -0.2
1,257,926 - -3.1
1,257,927 + -0.5
1,257,927 + +1.2
1,257,927 + -1.2
1,257,927 + +0.3
1,257,928 - +0.6
1,257,928 - +0.9
1,257,928 - +0.1
1,257,928 - -0.7
1,258,034 + Psyr_1110 0.14 -0.5
1,258,035 - Psyr_1110 0.14 +1.2
1,258,035 - Psyr_1110 0.14 -0.5
1,258,035 - Psyr_1110 0.14 -0.6
1,258,035 - Psyr_1110 0.14 +1.3
1,258,035 - Psyr_1110 0.14 +0.2
1,258,035 - Psyr_1110 0.14 -0.2
1,258,077 + Psyr_1110 0.18 -0.7
1,258,077 + Psyr_1110 0.18 -0.4
1,258,077 + Psyr_1110 0.18 -0.5
1,258,077 + Psyr_1110 0.18 +2.5
1,258,077 + Psyr_1110 0.18 +1.1
1,258,077 + Psyr_1110 0.18 -0.4
1,258,077 + Psyr_1110 0.18 +1.4
1,258,077 + Psyr_1110 0.18 +0.3
1,258,077 + Psyr_1110 0.18 -0.1
1,258,077 + Psyr_1110 0.18 -0.0
1,258,077 + Psyr_1110 0.18 +0.6
1,258,077 + Psyr_1110 0.18 -0.7
1,258,077 + Psyr_1110 0.18 +1.1
1,258,077 + Psyr_1110 0.18 -1.5
1,258,077 + Psyr_1110 0.18 +0.2
1,258,077 + Psyr_1110 0.18 -0.9
1,258,077 + Psyr_1110 0.18 +0.6
1,258,077 + Psyr_1110 0.18 -0.8
1,258,077 + Psyr_1110 0.18 -2.0
1,258,077 + Psyr_1110 0.18 +0.5
1,258,077 + Psyr_1110 0.18 -0.1
1,258,077 + Psyr_1110 0.18 +1.4
1,258,077 + Psyr_1110 0.18 +0.1
1,258,077 + Psyr_1110 0.18 -0.5
1,258,078 - Psyr_1110 0.18 -0.3
1,258,078 - Psyr_1110 0.18 -0.2
1,258,078 - Psyr_1110 0.18 -0.9
1,258,078 - Psyr_1110 0.18 +0.5
1,258,078 - Psyr_1110 0.18 -0.1
1,258,078 - Psyr_1110 0.18 +0.5
1,258,078 - Psyr_1110 0.18 -0.4
1,258,078 - Psyr_1110 0.18 +1.1
1,258,078 - Psyr_1110 0.18 -0.1
1,258,078 - Psyr_1110 0.18 -1.7
1,258,078 - Psyr_1110 0.18 +0.4
1,258,078 - Psyr_1110 0.18 +1.4
1,258,078 - Psyr_1110 0.18 -0.8
1,258,078 - Psyr_1110 0.18 +0.7
1,258,078 - +2.4
1,258,078 - Psyr_1110 0.18 -1.1
1,258,078 - Psyr_1110 0.18 +1.4
1,258,078 - Psyr_1110 0.18 +0.6
1,258,078 - Psyr_1110 0.18 -0.5
1,258,078 - Psyr_1110 0.18 +0.2
1,258,078 - Psyr_1110 0.18 -0.5
1,258,078 - Psyr_1110 0.18 -1.2
1,258,078 - Psyr_1110 0.18 -0.2
1,258,078 - Psyr_1110 0.18 +1.4
1,258,078 - Psyr_1110 0.18 -0.7
1,258,078 - Psyr_1110 0.18 +0.5
1,258,248 - Psyr_1110 0.36 +0.5
1,258,499 + Psyr_1110 0.62 +1.0
1,258,676 + Psyr_1110 0.80 -0.7
1,258,676 + Psyr_1110 0.80 +4.8
1,258,676 + Psyr_1110 0.80 +0.2
1,258,677 - Psyr_1110 0.80 -0.0
1,258,677 - Psyr_1110 0.80 -3.5
1,258,677 - Psyr_1110 0.80 -0.4
1,258,677 - Psyr_1110 0.80 +0.2
1,258,677 - Psyr_1110 0.80 +1.1
1,258,677 - Psyr_1110 0.80 +0.6
1,258,677 - Psyr_1110 0.80 +0.3
1,258,677 - Psyr_1110 0.80 +0.6
1,258,679 - Psyr_1110 0.80 +0.0
1,258,706 - Psyr_1110 0.83 +0.4
1,258,769 + Psyr_1110 0.90 +1.8
1,258,808 + +0.5
1,258,879 + -0.1
1,258,880 - -1.0
1,258,880 - +1.1

Or see this region's nucleotide sequence