Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1105

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1103 and Psyr_1104 overlap by 4 nucleotidesPsyr_1104 and Psyr_1105 are separated by 116 nucleotidesPsyr_1105 and Psyr_1106 are separated by 121 nucleotides Psyr_1103: Psyr_1103 - Protein of unknown function DUF454, at 1,249,245 to 1,249,703 _1103 Psyr_1104: Psyr_1104 - Heme oxygenase, at 1,249,700 to 1,250,314 _1104 Psyr_1105: Psyr_1105 - TonB-dependent hemoglobin/transferrin/lactoferrin receptor:TonB-dependent heme/hemoglobin receptor, at 1,250,431 to 1,253,010 _1105 Psyr_1106: Psyr_1106 - FecR protein, at 1,253,132 to 1,254,097 _1106 Position (kb) 1250 1251 1252 1253 1254Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1249.435 kb on + strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.569 kb on + strand, within Psyr_1103at 1249.569 kb on + strand, within Psyr_1103at 1249.570 kb on - strand, within Psyr_1103at 1249.603 kb on - strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1249.650 kb on + strand, within Psyr_1103at 1249.681 kb on - strandat 1250.136 kb on + strand, within Psyr_1104at 1250.137 kb on - strand, within Psyr_1104at 1250.167 kb on - strand, within Psyr_1104at 1250.167 kb on - strand, within Psyr_1104at 1250.191 kb on - strand, within Psyr_1104at 1250.317 kb on + strandat 1250.318 kb on - strandat 1250.318 kb on - strandat 1250.349 kb on + strandat 1250.349 kb on + strandat 1250.350 kb on - strandat 1250.350 kb on - strandat 1250.559 kb on - strandat 1250.579 kb on + strandat 1250.579 kb on + strandat 1250.580 kb on - strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.843 kb on + strand, within Psyr_1105at 1250.844 kb on - strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.941 kb on + strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1250.942 kb on - strand, within Psyr_1105at 1251.011 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.020 kb on + strand, within Psyr_1105at 1251.021 kb on - strand, within Psyr_1105at 1251.021 kb on - strand, within Psyr_1105at 1251.194 kb on + strand, within Psyr_1105at 1251.204 kb on - strand, within Psyr_1105at 1251.204 kb on - strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.212 kb on + strand, within Psyr_1105at 1251.213 kb on - strand, within Psyr_1105at 1251.213 kb on - strand, within Psyr_1105at 1251.230 kb on + strand, within Psyr_1105at 1251.230 kb on + strand, within Psyr_1105at 1251.230 kb on + strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105at 1251.231 kb on - strand, within Psyr_1105at 1251.422 kb on + strand, within Psyr_1105at 1251.423 kb on - strand, within Psyr_1105at 1251.423 kb on - strand, within Psyr_1105at 1251.579 kb on - strand, within Psyr_1105at 1251.656 kb on + strand, within Psyr_1105at 1251.702 kb on - strand, within Psyr_1105at 1251.702 kb on - strand, within Psyr_1105at 1251.702 kb on - strand, within Psyr_1105at 1251.740 kb on + strand, within Psyr_1105at 1251.741 kb on - strand, within Psyr_1105at 1251.848 kb on + strand, within Psyr_1105at 1251.848 kb on + strand, within Psyr_1105at 1251.848 kb on + strand, within Psyr_1105at 1251.848 kb on + strand, within Psyr_1105at 1251.848 kb on + strand, within Psyr_1105at 1251.848 kb on + strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.849 kb on - strand, within Psyr_1105at 1251.923 kb on + strand, within Psyr_1105at 1251.923 kb on + strand, within Psyr_1105at 1251.924 kb on - strand, within Psyr_1105at 1251.932 kb on + strand, within Psyr_1105at 1251.962 kb on + strand, within Psyr_1105at 1252.232 kb on + strand, within Psyr_1105at 1252.232 kb on + strand, within Psyr_1105at 1252.232 kb on + strand, within Psyr_1105at 1252.232 kb on + strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.233 kb on - strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.235 kb on + strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.236 kb on - strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.328 kb on + strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.329 kb on - strand, within Psyr_1105at 1252.431 kb on + strand, within Psyr_1105at 1252.431 kb on + strand, within Psyr_1105at 1252.432 kb on - strand, within Psyr_1105at 1252.432 kb on - strand, within Psyr_1105at 1252.433 kb on + strand, within Psyr_1105at 1252.433 kb on + strand, within Psyr_1105at 1252.434 kb on - strand, within Psyr_1105at 1252.434 kb on - strand, within Psyr_1105at 1252.546 kb on + strand, within Psyr_1105at 1252.546 kb on + strand, within Psyr_1105at 1252.547 kb on - strand, within Psyr_1105at 1252.547 kb on - strand, within Psyr_1105at 1252.547 kb on - strand, within Psyr_1105at 1252.789 kb on + strandat 1252.789 kb on + strandat 1252.789 kb on + strandat 1252.790 kb on - strandat 1252.863 kb on - strandat 1252.863 kb on - strandat 1252.891 kb on - strandat 1252.891 kb on - strandat 1252.965 kb on + strandat 1252.965 kb on + strandat 1253.041 kb on + strandat 1253.041 kb on + strandat 1253.042 kb on - strandat 1253.042 kb on - strandat 1253.048 kb on + strandat 1253.049 kb on - strandat 1253.049 kb on - strandat 1253.049 kb on - strandat 1253.091 kb on + strandat 1253.092 kb on - strandat 1253.227 kb on - strandat 1253.287 kb on - strand, within Psyr_1106at 1253.310 kb on - strand, within Psyr_1106at 1253.310 kb on - strand, within Psyr_1106at 1253.336 kb on + strand, within Psyr_1106at 1253.336 kb on + strand, within Psyr_1106at 1253.495 kb on + strand, within Psyr_1106at 1253.496 kb on - strand, within Psyr_1106at 1253.496 kb on - strand, within Psyr_1106at 1253.496 kb on - strand, within Psyr_1106at 1253.625 kb on + strand, within Psyr_1106at 1253.625 kb on + strand, within Psyr_1106at 1253.626 kb on - strand, within Psyr_1106at 1253.626 kb on - strand, within Psyr_1106at 1253.626 kb on - strand, within Psyr_1106

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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1,249,435 + Psyr_1103 0.41 +0.4
1,249,436 - Psyr_1103 0.42 +1.1
1,249,436 - Psyr_1103 0.42 -0.7
1,249,436 - Psyr_1103 0.42 +1.4
1,249,436 - Psyr_1103 0.42 -0.2
1,249,436 - Psyr_1103 0.42 -3.1
1,249,569 + Psyr_1103 0.71 +0.3
1,249,569 + Psyr_1103 0.71 -0.6
1,249,570 - Psyr_1103 0.71 +0.0
1,249,603 - Psyr_1103 0.78 +0.6
1,249,636 + Psyr_1103 0.85 -0.7
1,249,636 + Psyr_1103 0.85 +0.6
1,249,636 + Psyr_1103 0.85 +0.1
1,249,636 + Psyr_1103 0.85 -0.0
1,249,636 + Psyr_1103 0.85 -0.1
1,249,637 - Psyr_1103 0.85 +0.3
1,249,637 - Psyr_1103 0.85 +1.5
1,249,637 - Psyr_1103 0.85 -0.1
1,249,650 + Psyr_1103 0.88 -0.8
1,249,681 - -0.4
1,250,136 + Psyr_1104 0.71 +0.3
1,250,137 - Psyr_1104 0.71 +0.5
1,250,167 - Psyr_1104 0.76 -0.9
1,250,167 - Psyr_1104 0.76 -0.4
1,250,191 - Psyr_1104 0.80 +1.4
1,250,317 + +0.8
1,250,318 - -0.8
1,250,318 - -0.5
1,250,349 + +1.1
1,250,349 + +0.2
1,250,350 - -1.2
1,250,350 - +0.0
1,250,559 - -0.5
1,250,579 + +1.5
1,250,579 + +0.9
1,250,580 - -3.1
1,250,618 + +0.8
1,250,618 + -0.8
1,250,618 + +0.4
1,250,618 + -0.2
1,250,618 + +0.8
1,250,618 + -0.2
1,250,618 + -0.1
1,250,618 + -1.6
1,250,618 + -0.7
1,250,619 - -0.1
1,250,619 - +0.8
1,250,619 - +0.3
1,250,619 - -0.1
1,250,619 - -1.3
1,250,843 + Psyr_1105 0.16 -0.9
1,250,844 - Psyr_1105 0.16 +0.0
1,250,941 + Psyr_1105 0.20 -0.9
1,250,941 + Psyr_1105 0.20 -1.3
1,250,941 + Psyr_1105 0.20 +0.0
1,250,941 + Psyr_1105 0.20 +1.9
1,250,941 + Psyr_1105 0.20 +1.0
1,250,941 + Psyr_1105 0.20 -0.8
1,250,941 + Psyr_1105 0.20 -0.2
1,250,942 - Psyr_1105 0.20 -0.4
1,250,942 - Psyr_1105 0.20 +0.0
1,250,942 - Psyr_1105 0.20 +0.2
1,250,942 - Psyr_1105 0.20 -1.0
1,250,942 - Psyr_1105 0.20 +0.5
1,251,011 + Psyr_1105 0.22 -0.1
1,251,020 + Psyr_1105 0.23 +1.4
1,251,020 + Psyr_1105 0.23 +0.8
1,251,020 + Psyr_1105 0.23 -0.9
1,251,020 + Psyr_1105 0.23 +0.6
1,251,021 - Psyr_1105 0.23 -1.8
1,251,021 - Psyr_1105 0.23 -1.1
1,251,194 + Psyr_1105 0.30 -0.8
1,251,204 - Psyr_1105 0.30 -0.4
1,251,204 - Psyr_1105 0.30 -0.1
1,251,212 + Psyr_1105 0.30 +0.0
1,251,212 + Psyr_1105 0.30 -0.2
1,251,212 + Psyr_1105 0.30 -0.9
1,251,212 + Psyr_1105 0.30 -0.3
1,251,212 + Psyr_1105 0.30 +0.5
1,251,213 - Psyr_1105 0.30 -1.0
1,251,213 - Psyr_1105 0.30 -1.7
1,251,230 + Psyr_1105 0.31 +0.4
1,251,230 + Psyr_1105 0.31 -0.1
1,251,230 + Psyr_1105 0.31 +0.1
1,251,231 - Psyr_1105 0.31 -1.0
1,251,231 - Psyr_1105 0.31 -1.3
1,251,231 - Psyr_1105 0.31 +0.4
1,251,231 - Psyr_1105 0.31 -1.0
1,251,422 + Psyr_1105 0.38 -0.9
1,251,423 - Psyr_1105 0.38 +0.1
1,251,423 - Psyr_1105 0.38 -0.7
1,251,579 - Psyr_1105 0.44 -0.9
1,251,656 + Psyr_1105 0.47 -0.3
1,251,702 - Psyr_1105 0.49 -2.6
1,251,702 - Psyr_1105 0.49 -0.2
1,251,702 - Psyr_1105 0.49 +0.8
1,251,740 + Psyr_1105 0.51 -0.1
1,251,741 - Psyr_1105 0.51 -0.8
1,251,848 + Psyr_1105 0.55 -0.2
1,251,848 + Psyr_1105 0.55 -0.1
1,251,848 + Psyr_1105 0.55 -0.5
1,251,848 + Psyr_1105 0.55 -0.5
1,251,848 + Psyr_1105 0.55 +1.5
1,251,848 + Psyr_1105 0.55 -0.4
1,251,849 - Psyr_1105 0.55 +0.5
1,251,849 - Psyr_1105 0.55 -0.1
1,251,849 - Psyr_1105 0.55 -0.9
1,251,849 - Psyr_1105 0.55 -0.3
1,251,849 - Psyr_1105 0.55 +1.9
1,251,849 - Psyr_1105 0.55 -0.3
1,251,849 - Psyr_1105 0.55 -1.2
1,251,849 - Psyr_1105 0.55 +0.6
1,251,849 - Psyr_1105 0.55 -1.4
1,251,923 + Psyr_1105 0.58 +0.5
1,251,923 + Psyr_1105 0.58 +0.5
1,251,924 - Psyr_1105 0.58 +0.4
1,251,932 + Psyr_1105 0.58 -0.0
1,251,962 + Psyr_1105 0.59 -0.0
1,252,232 + Psyr_1105 0.70 -0.9
1,252,232 + Psyr_1105 0.70 -1.1
1,252,232 + Psyr_1105 0.70 -0.3
1,252,232 + Psyr_1105 0.70 +0.3
1,252,233 - Psyr_1105 0.70 +0.8
1,252,233 - Psyr_1105 0.70 +0.9
1,252,233 - Psyr_1105 0.70 -0.1
1,252,233 - Psyr_1105 0.70 -1.9
1,252,235 + Psyr_1105 0.70 -0.2
1,252,235 + Psyr_1105 0.70 -0.7
1,252,235 + Psyr_1105 0.70 -0.4
1,252,235 + Psyr_1105 0.70 -0.2
1,252,235 + Psyr_1105 0.70 -0.0
1,252,236 - Psyr_1105 0.70 -0.4
1,252,236 - Psyr_1105 0.70 +1.3
1,252,236 - Psyr_1105 0.70 -0.4
1,252,236 - Psyr_1105 0.70 +0.1
1,252,236 - Psyr_1105 0.70 +0.5
1,252,328 + Psyr_1105 0.74 -0.6
1,252,328 + Psyr_1105 0.74 -0.1
1,252,328 + Psyr_1105 0.74 -0.7
1,252,328 + Psyr_1105 0.74 -0.5
1,252,328 + Psyr_1105 0.74 +0.8
1,252,328 + Psyr_1105 0.74 -0.4
1,252,328 + Psyr_1105 0.74 -0.5
1,252,328 + Psyr_1105 0.74 -0.8
1,252,328 + Psyr_1105 0.74 -0.0
1,252,329 - Psyr_1105 0.74 +0.8
1,252,329 - Psyr_1105 0.74 -1.2
1,252,329 - Psyr_1105 0.74 +0.6
1,252,329 - Psyr_1105 0.74 +0.0
1,252,329 - Psyr_1105 0.74 +0.2
1,252,329 - Psyr_1105 0.74 +1.4
1,252,329 - Psyr_1105 0.74 -0.4
1,252,329 - Psyr_1105 0.74 +1.6
1,252,329 - Psyr_1105 0.74 -0.4
1,252,329 - Psyr_1105 0.74 -1.7
1,252,431 + Psyr_1105 0.78 -0.3
1,252,431 + Psyr_1105 0.78 +1.0
1,252,432 - Psyr_1105 0.78 -0.4
1,252,432 - Psyr_1105 0.78 -0.5
1,252,433 + Psyr_1105 0.78 -0.0
1,252,433 + Psyr_1105 0.78 -0.6
1,252,434 - Psyr_1105 0.78 -0.8
1,252,434 - Psyr_1105 0.78 -0.1
1,252,546 + Psyr_1105 0.82 -0.4
1,252,546 + Psyr_1105 0.82 -1.7
1,252,547 - Psyr_1105 0.82 +0.1
1,252,547 - Psyr_1105 0.82 +2.2
1,252,547 - Psyr_1105 0.82 +0.1
1,252,789 + +0.4
1,252,789 + +0.0
1,252,789 + -0.1
1,252,790 - -0.8
1,252,863 - -0.9
1,252,863 - +0.1
1,252,891 - +1.8
1,252,891 - -0.1
1,252,965 + -0.4
1,252,965 + -0.2
1,253,041 + -0.2
1,253,041 + +0.2
1,253,042 - +0.6
1,253,042 - +0.3
1,253,048 + -0.1
1,253,049 - -0.2
1,253,049 - -0.0
1,253,049 - +1.0
1,253,091 + +1.2
1,253,092 - +0.0
1,253,227 - -2.0
1,253,287 - Psyr_1106 0.16 -1.0
1,253,310 - Psyr_1106 0.18 +0.6
1,253,310 - Psyr_1106 0.18 +1.0
1,253,336 + Psyr_1106 0.21 +0.8
1,253,336 + Psyr_1106 0.21 +0.0
1,253,495 + Psyr_1106 0.38 -0.4
1,253,496 - Psyr_1106 0.38 +1.7
1,253,496 - Psyr_1106 0.38 -0.2
1,253,496 - Psyr_1106 0.38 -0.3
1,253,625 + Psyr_1106 0.51 +1.5
1,253,625 + Psyr_1106 0.51 +1.3
1,253,626 - Psyr_1106 0.51 -0.3
1,253,626 - Psyr_1106 0.51 -1.0
1,253,626 - Psyr_1106 0.51 +0.1

Or see this region's nucleotide sequence