Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0881

Experiment: KB with Rotenone 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Rotenone 0.125 mg/ml
1,003,390	+		Psyr_0880	0.44	+0.4
1,003,390	+		Psyr_0880	0.44	-1.1
1,003,390	+		Psyr_0880	0.44	+0.9
1,003,390	+		Psyr_0880	0.44	-0.6
1,003,390	+		Psyr_0880	0.44	+0.5
1,003,391	-		Psyr_0880	0.44	-1.8
1,003,565	+		Psyr_0880	0.59	-0.0
1,003,590	+		Psyr_0880	0.61	+0.6
1,003,591	-		Psyr_0880	0.61	-0.6
1,003,697	+		Psyr_0880	0.70	+0.1
1,003,698	-		Psyr_0880	0.70	+0.5
1,003,698	-		Psyr_0880	0.70	+0.2
1,003,772	+		Psyr_0880	0.76	+0.1
1,003,905	+		Psyr_0880	0.87	+2.3
1,003,905	+		Psyr_0880	0.87	+1.4
1,003,905	+		Psyr_0880	0.87	-0.2
1,003,906	-		Psyr_0880	0.87	+0.2
1,003,906	-		Psyr_0880	0.87	-0.0
1,003,906	-				+1.1
1,003,978	+				+0.1
1,003,978	+				+0.5
1,003,979	-				+2.1
1,004,086	+				+0.2
1,004,087	-				-0.6
1,004,106	-				-0.8
1,004,106	-				-1.0
1,004,106	-				+2.5
1,004,109	+				+1.2
1,004,109	+				-0.1
1,004,109	+				-1.7
1,004,110	-				-0.7
1,004,110	-				+0.9
1,004,110	-				+0.1
1,004,110	-				+0.6
1,004,110	-				-2.5
1,004,110	-				+0.4
1,004,110	-				+0.8
1,004,110	-				-0.6
1,004,110	-				+0.3
1,004,113	+				-0.7
1,004,113	+				+1.3
1,004,113	+				+0.2
1,004,113	+				+1.9
1,004,113	+				-0.4
1,004,113	+				+2.2
1,004,114	-				+1.3
1,004,114	-				+0.8
1,004,114	-				+0.1
1,004,114	-				-1.2
1,004,145	+				+0.7
1,004,145	+				+0.3
1,004,145	+				+0.6
1,004,145	+				+0.3
1,004,145	+				-0.5
1,004,146	-				-0.2
1,004,146	-				-1.1
1,004,265	+				-0.1
1,004,266	-				+1.3
1,004,266	-				+0.8
1,004,320	+				+0.4
1,004,320	+				-0.3
1,004,320	+				+0.6
1,004,321	-				-0.4
1,004,321	-				+0.3
1,004,321	-				-1.0
1,004,321	-				-0.7
1,004,455	-		Psyr_0881	0.30	+0.4
1,004,531	-		Psyr_0881	0.57	+0.5
1,004,531	-		Psyr_0881	0.57	-0.7
1,004,574	+		Psyr_0881	0.73	+0.2
1,004,574	+		Psyr_0881	0.73	-2.0
1,004,574	+		Psyr_0881	0.73	+0.4
1,004,574	+		Psyr_0881	0.73	-0.3
1,004,574	+		Psyr_0881	0.73	-0.2
1,004,574	+		Psyr_0881	0.73	+1.2
1,004,574	+		Psyr_0881	0.73	+2.2
1,004,575	-		Psyr_0881	0.73	-0.3
1,004,575	-		Psyr_0881	0.73	-0.3
1,004,575	-		Psyr_0881	0.73	-1.0
1,004,575	-		Psyr_0881	0.73	+0.4
1,004,575	-		Psyr_0881	0.73	+0.3
1,004,575	-		Psyr_0881	0.73	+0.6
1,004,575	-		Psyr_0881	0.73	+2.2
1,004,575	-		Psyr_0881	0.73	-0.4
1,004,576	+		Psyr_0881	0.73	+0.1
1,004,576	+				-0.7
1,004,577	-		Psyr_0881	0.74	+0.6
1,004,612	-		Psyr_0881	0.86	+1.5
1,004,630	+				+0.2
1,004,630	+				+2.6
1,004,631	-				+1.0
1,004,631	-				+0.1
1,004,631	-				+0.6
1,004,636	+				-0.7
1,004,636	+				+1.0
1,004,637	-				+0.6
1,004,637	-				-0.2
1,004,637	-				+0.8
1,004,637	-				+0.8
1,004,661	-				-1.7
1,004,733	+				-0.4
1,004,734	-				+0.4
1,004,737	+				+0.6
1,004,743	-				+0.2
1,004,830	-		Psyr_0882	0.31	+2.1
1,004,830	-		Psyr_0882	0.31	+1.5
1,004,863	+		Psyr_0882	0.44	+3.0
1,004,863	+		Psyr_0882	0.44	+1.9
1,004,863	+				-0.4
1,004,863	+		Psyr_0882	0.44	-0.2
1,004,864	-		Psyr_0882	0.44	+0.5
1,004,864	-		Psyr_0882	0.44	+1.9
1,004,906	-		Psyr_0882	0.60	-1.7
1,004,906	-		Psyr_0882	0.60	+0.9
1,004,906	-		Psyr_0882	0.60	-1.2
1,004,914	+		Psyr_0882	0.63	-0.1
1,004,915	-		Psyr_0882	0.63	-1.4
1,004,915	-		Psyr_0882	0.63	+0.3
1,004,943	-		Psyr_0882	0.74	-0.5
1,004,946	+		Psyr_0882	0.75	-1.4
1,004,964	+		Psyr_0882	0.82	+1.2
1,004,964	+		Psyr_0882	0.82	+2.1
1,004,964	+		Psyr_0882	0.82	+1.4
1,004,964	+		Psyr_0882	0.82	-0.1
1,004,964	+		Psyr_0882	0.82	-0.8
1,004,964	+		Psyr_0882	0.82	-0.2
1,004,964	+		Psyr_0882	0.82	+2.0
1,004,965	-		Psyr_0882	0.82	-2.5
1,004,965	-		Psyr_0882	0.82	+0.1
1,004,965	-		Psyr_0882	0.82	-0.9
1,004,965	-		Psyr_0882	0.82	-0.9
1,004,990	+				-0.6
1,004,991	-				-0.4
1,005,106	-				+0.6
1,005,106	-				+0.6
1,005,106	-				+0.6
1,005,126	+				-0.9
1,005,136	-				+0.6
1,005,142	+				+0.5
1,005,142	+				+0.6
1,005,148	-				-0.2
1,005,182	+				+0.3
1,005,191	-				+0.7
1,005,212	+				+0.1
1,005,213	-				+0.6
1,005,213	-				-0.6
1,005,223	-		Psyr_0883	0.10	-0.8
1,005,280	+		Psyr_0883	0.13	+1.0
1,005,281	-		Psyr_0883	0.13	-0.9
1,005,282	+		Psyr_0883	0.13	+0.3
1,005,282	+		Psyr_0883	0.13	+0.8
1,005,282	+		Psyr_0883	0.13	-0.0
1,005,283	-		Psyr_0883	0.13	-0.3
1,005,283	-		Psyr_0883	0.13	-0.1
1,005,283	-		Psyr_0883	0.13	-0.0
1,005,285	+		Psyr_0883	0.13	+1.6
1,005,285	+		Psyr_0883	0.13	-0.1
1,005,285	+		Psyr_0883	0.13	+0.6
1,005,285	+		Psyr_0883	0.13	+0.4
1,005,285	+		Psyr_0883	0.13	+0.8
1,005,285	+		Psyr_0883	0.13	+0.9
1,005,286	-		Psyr_0883	0.13	-0.9
1,005,286	-		Psyr_0883	0.13	-0.4
1,005,286	-		Psyr_0883	0.13	+1.0
1,005,286	-		Psyr_0883	0.13	-0.2
1,005,407	+		Psyr_0883	0.19	+0.5
1,005,407	+		Psyr_0883	0.19	-0.4
1,005,407	+		Psyr_0883	0.19	-0.5
1,005,407	+		Psyr_0883	0.19	-0.5
1,005,407	+		Psyr_0883	0.19	+0.4
1,005,408	-		Psyr_0883	0.19	-0.9
1,005,408	-		Psyr_0883	0.19	-0.9
1,005,408	-		Psyr_0883	0.19	+0.3
1,005,421	-		Psyr_0883	0.20	-0.6
1,005,449	+		Psyr_0883	0.21	-0.2
1,005,470	+		Psyr_0883	0.22	+0.6
1,005,470	+		Psyr_0883	0.22	+0.1
1,005,470	+		Psyr_0883	0.22	-0.3
1,005,471	-		Psyr_0883	0.22	+1.4
1,005,493	+		Psyr_0883	0.24	+0.4
1,005,501	-		Psyr_0883	0.24	+3.3
1,005,506	+		Psyr_0883	0.24	+0.1
1,005,506	+		Psyr_0883	0.24	+0.6
1,005,507	-		Psyr_0883	0.24	+0.4
1,005,507	-		Psyr_0883	0.24	-0.6
1,005,507	-		Psyr_0883	0.24	-0.3
1,005,507	-		Psyr_0883	0.24	+1.1
1,005,507	-		Psyr_0883	0.24	-0.2
1,005,567	+		Psyr_0883	0.27	+0.0
1,005,579	+		Psyr_0883	0.28	-1.1
1,005,579	+		Psyr_0883	0.28	-0.6
1,005,580	-		Psyr_0883	0.28	-0.9
1,005,580	-		Psyr_0883	0.28	-1.2
1,005,580	-		Psyr_0883	0.28	+0.0
1,005,590	+		Psyr_0883	0.28	-0.8
1,005,591	-		Psyr_0883	0.28	-0.2