Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0666

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0664 and Psyr_0665 are separated by 4 nucleotidesPsyr_0665 and Psyr_0666 overlap by 4 nucleotidesPsyr_0666 and Psyr_0667 are separated by 0 nucleotides Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599 _0664 Psyr_0665: Psyr_0665 - transport system permease protein, at 753,604 to 754,572 _0665 Psyr_0666: Psyr_0666 - transport system permease protein, at 754,569 to 755,558 _0666 Psyr_0667: Psyr_0667 - Periplasmic binding protein, at 755,559 to 756,479 _0667 Position (kb) 754 755 756Strain fitness (log2 ratio) -2 -1 0 1 2 3at 753.594 kb on - strandat 753.594 kb on - strandat 753.765 kb on - strand, within Psyr_0665at 753.894 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.181 kb on + strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.182 kb on - strand, within Psyr_0665at 754.572 kb on + strandat 754.588 kb on - strandat 754.842 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.407 kb on + strand, within Psyr_0666at 755.408 kb on - strand, within Psyr_0666at 755.561 kb on - strandat 755.684 kb on + strand, within Psyr_0667at 755.881 kb on + strand, within Psyr_0667at 755.881 kb on + strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 756.067 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.125 kb on - strand, within Psyr_0667at 756.125 kb on - strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.191 kb on + strand, within Psyr_0667at 756.192 kb on - strand, within Psyr_0667at 756.213 kb on + strand, within Psyr_0667at 756.213 kb on + strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.495 kb on + strandat 756.496 kb on - strandat 756.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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753,594 - -0.1
753,594 - +2.7
753,765 - Psyr_0665 0.17 +0.2
753,894 + Psyr_0665 0.30 -1.1
754,181 + Psyr_0665 0.60 +0.3
754,181 + Psyr_0665 0.60 +1.9
754,181 + Psyr_0665 0.60 +0.6
754,181 + Psyr_0665 0.60 +1.1
754,181 + Psyr_0665 0.60 +0.2
754,181 + Psyr_0665 0.60 +0.4
754,181 + Psyr_0665 0.60 -0.0
754,181 + Psyr_0665 0.60 -0.0
754,181 + Psyr_0665 0.60 +0.6
754,181 + Psyr_0665 0.60 -0.4
754,182 - Psyr_0665 0.60 -0.8
754,182 - Psyr_0665 0.60 -0.5
754,182 - Psyr_0665 0.60 +0.2
754,182 - Psyr_0665 0.60 +0.6
754,182 - Psyr_0665 0.60 +1.4
754,182 - Psyr_0665 0.60 -0.5
754,182 - Psyr_0665 0.60 -0.3
754,182 - Psyr_0665 0.60 -0.6
754,182 - Psyr_0665 0.60 +1.1
754,182 - Psyr_0665 0.60 +0.0
754,182 - Psyr_0665 0.60 -0.2
754,182 - Psyr_0665 0.60 +0.2
754,572 + +1.1
754,588 - -1.7
754,842 + Psyr_0666 0.28 +2.9
755,407 + Psyr_0666 0.85 +2.3
755,407 + Psyr_0666 0.85 +0.8
755,407 + Psyr_0666 0.85 +0.8
755,407 + Psyr_0666 0.85 +0.3
755,407 + Psyr_0666 0.85 +0.3
755,407 + Psyr_0666 0.85 +0.8
755,408 - Psyr_0666 0.85 +0.6
755,561 - +1.1
755,684 + Psyr_0667 0.14 -1.3
755,881 + Psyr_0667 0.35 +0.3
755,881 + Psyr_0667 0.35 +0.8
755,882 - Psyr_0667 0.35 +0.8
755,882 - Psyr_0667 0.35 -0.0
755,882 - Psyr_0667 0.35 +1.3
755,882 - Psyr_0667 0.35 -0.1
756,067 + Psyr_0667 0.55 +1.2
756,124 + Psyr_0667 0.61 -0.6
756,124 + Psyr_0667 0.61 -0.8
756,124 + Psyr_0667 0.61 +1.1
756,124 + Psyr_0667 0.61 +1.4
756,125 - Psyr_0667 0.61 +0.9
756,125 - Psyr_0667 0.61 -0.6
756,189 + Psyr_0667 0.68 +0.1
756,189 + Psyr_0667 0.68 -0.2
756,189 + Psyr_0667 0.68 -0.0
756,189 + Psyr_0667 0.68 -0.1
756,189 + Psyr_0667 0.68 +0.4
756,189 + Psyr_0667 0.68 -0.0
756,189 + Psyr_0667 0.68 +1.2
756,189 + Psyr_0667 0.68 -0.5
756,189 + Psyr_0667 0.68 +1.2
756,189 + Psyr_0667 0.68 +1.3
756,189 + Psyr_0667 0.68 +0.2
756,189 + Psyr_0667 0.68 -0.2
756,189 + Psyr_0667 0.68 -0.5
756,189 + Psyr_0667 0.68 +0.3
756,189 + Psyr_0667 0.68 -1.1
756,190 - Psyr_0667 0.69 -0.1
756,190 - Psyr_0667 0.69 -0.4
756,190 - Psyr_0667 0.69 -0.8
756,190 - Psyr_0667 0.69 +1.4
756,190 - Psyr_0667 0.69 +0.1
756,190 - Psyr_0667 0.69 -0.7
756,190 - Psyr_0667 0.69 +0.7
756,190 - Psyr_0667 0.69 -0.8
756,190 - Psyr_0667 0.69 +0.1
756,190 - Psyr_0667 0.69 +0.5
756,190 - Psyr_0667 0.69 -0.3
756,190 - Psyr_0667 0.69 -0.2
756,190 - Psyr_0667 0.69 +0.2
756,190 - Psyr_0667 0.69 +1.1
756,191 + Psyr_0667 0.69 +2.4
756,192 - Psyr_0667 0.69 +0.7
756,213 + Psyr_0667 0.71 +0.1
756,213 + Psyr_0667 0.71 +0.1
756,214 - Psyr_0667 0.71 -2.2
756,214 - Psyr_0667 0.71 +2.5
756,214 - Psyr_0667 0.71 -0.3
756,214 - Psyr_0667 0.71 -1.3
756,495 + -0.9
756,496 - +1.3
756,496 - +0.6

Or see this region's nucleotide sequence