Experiment: KB with Rotenone 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0543 and Psyr_0544 are separated by 426 nucleotides Psyr_0544 and Psyr_0545 are separated by 431 nucleotides
Psyr_0543: Psyr_0543 - Type I secretion outer membrane protein, TolC, at 613,307 to 614,746
_0543
Psyr_0544: Psyr_0544 - hydroxymethylpyrimidine synthase, at 615,173 to 617,062
_0544
Psyr_0545: Psyr_0545 - Permease for cytosine/purines, uracil, thiamine, allantoin, at 617,494 to 618,783
_0545
Position (kb) 615
616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 614.173 kb on - strand, within Psyr_0543 at 614.173 kb on - strand, within Psyr_0543 at 614.306 kb on + strand, within Psyr_0543 at 614.306 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.589 kb on + strand, within Psyr_0543 at 614.589 kb on + strand, within Psyr_0543 at 614.774 kb on - strand at 614.777 kb on + strand at 614.777 kb on + strand at 614.778 kb on - strand at 614.814 kb on + strand at 614.814 kb on + strand at 614.814 kb on + strand at 614.815 kb on - strand at 614.815 kb on - strand at 614.815 kb on - strand at 614.849 kb on - strand at 614.857 kb on + strand at 614.857 kb on + strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.904 kb on + strand at 614.904 kb on + strand at 614.904 kb on + strand at 614.905 kb on - strand at 614.905 kb on - strand at 614.905 kb on - strand at 614.905 kb on - strand at 614.937 kb on + strand at 614.938 kb on - strand at 614.938 kb on - strand at 614.938 kb on - strand at 614.938 kb on - strand at 615.062 kb on + strand at 615.063 kb on - strand at 615.141 kb on + strand at 615.141 kb on + strand at 615.141 kb on + strand at 615.142 kb on - strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.266 kb on + strand at 615.267 kb on - strand at 615.371 kb on + strand, within Psyr_0544 at 615.371 kb on + strand, within Psyr_0544 at 615.372 kb on - strand, within Psyr_0544 at 615.389 kb on + strand, within Psyr_0544 at 615.605 kb on + strand, within Psyr_0544 at 615.606 kb on - strand, within Psyr_0544 at 615.606 kb on - strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.642 kb on - strand, within Psyr_0544 at 615.733 kb on + strand, within Psyr_0544 at 615.734 kb on - strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.044 kb on - strand, within Psyr_0544 at 616.044 kb on - strand, within Psyr_0544 at 616.140 kb on - strand, within Psyr_0544 at 616.173 kb on - strand, within Psyr_0544 at 616.272 kb on - strand, within Psyr_0544 at 616.272 kb on - strand, within Psyr_0544 at 616.272 kb on - strand, within Psyr_0544 at 616.311 kb on - strand, within Psyr_0544 at 616.532 kb on + strand, within Psyr_0544 at 616.532 kb on + strand, within Psyr_0544 at 616.533 kb on - strand, within Psyr_0544 at 616.533 kb on - strand, within Psyr_0544 at 616.637 kb on + strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.847 kb on + strand, within Psyr_0544 at 616.953 kb on - strand at 617.038 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.081 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.117 kb on + strand at 617.117 kb on + strand at 617.161 kb on - strand at 617.161 kb on - strand at 617.172 kb on + strand at 617.173 kb on - strand at 617.173 kb on - strand at 617.173 kb on - strand at 617.189 kb on + strand at 617.189 kb on + strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.371 kb on + strand at 617.371 kb on + strand at 617.371 kb on + strand at 617.402 kb on - strand at 617.499 kb on + strand at 617.499 kb on + strand at 617.499 kb on + strand at 617.500 kb on - strand at 617.500 kb on - strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml remove 614,173 - Psyr_0543 0.60 +1.3 614,173 - Psyr_0543 0.60 +0.9 614,306 + Psyr_0543 0.69 -1.2 614,306 + Psyr_0543 0.69 -1.4 614,316 + Psyr_0543 0.70 +0.1 614,316 + Psyr_0543 0.70 +1.3 614,316 + Psyr_0543 0.70 -0.7 614,317 - Psyr_0543 0.70 +0.3 614,317 - Psyr_0543 0.70 +0.7 614,317 - Psyr_0543 0.70 +1.0 614,589 + Psyr_0543 0.89 +0.3 614,589 + Psyr_0543 0.89 -1.6 614,774 - +0.2 614,777 + +0.1 614,777 + -0.3 614,778 - -0.2 614,814 + +0.3 614,814 + +0.2 614,814 + -0.3 614,815 - -0.1 614,815 - -0.1 614,815 - -0.3 614,849 - +0.7 614,857 + -0.1 614,857 + +0.6 614,876 - -1.5 614,876 - +1.3 614,876 - +0.6 614,904 + -0.3 614,904 + -0.1 614,904 + +0.6 614,905 - -1.1 614,905 - -0.5 614,905 - -0.8 614,905 - +0.6 614,937 + +0.8 614,938 - -2.3 614,938 - +1.1 614,938 - +0.4 614,938 - +0.6 615,062 + -0.1 615,063 - +0.1 615,141 + -0.3 615,141 + -1.1 615,141 + +1.2 615,142 - +0.4 615,178 + +0.1 615,178 + -1.3 615,178 + +0.5 615,178 + -0.8 615,178 + -0.1 615,178 + -0.1 615,180 + -0.5 615,180 + +0.2 615,180 + -2.6 615,180 + +0.1 615,181 - -0.3 615,181 - +0.2 615,181 - -1.4 615,181 - -0.3 615,181 - +1.0 615,181 - -0.8 615,266 + +0.8 615,267 - -0.1 615,371 + Psyr_0544 0.10 -1.2 615,371 + Psyr_0544 0.10 -0.9 615,372 - Psyr_0544 0.11 +0.9 615,389 + Psyr_0544 0.11 -2.4 615,605 + Psyr_0544 0.23 -0.4 615,606 - Psyr_0544 0.23 +0.3 615,606 - Psyr_0544 0.23 +0.5 615,641 + Psyr_0544 0.25 +0.7 615,641 + Psyr_0544 0.25 -1.0 615,641 + Psyr_0544 0.25 +0.9 615,641 + Psyr_0544 0.25 -0.2 615,641 + Psyr_0544 0.25 -0.1 615,641 + Psyr_0544 0.25 +0.0 615,642 - Psyr_0544 0.25 -0.4 615,733 + Psyr_0544 0.30 +0.5 615,734 - Psyr_0544 0.30 -0.1 616,043 + Psyr_0544 0.46 +0.0 616,043 + Psyr_0544 0.46 -0.7 616,043 + Psyr_0544 0.46 +1.1 616,044 - Psyr_0544 0.46 -0.9 616,044 - Psyr_0544 0.46 +1.9 616,140 - Psyr_0544 0.51 -0.6 616,173 - Psyr_0544 0.53 +2.9 616,272 - Psyr_0544 0.58 -1.4 616,272 - Psyr_0544 0.58 +1.2 616,272 - Psyr_0544 0.58 +0.3 616,311 - Psyr_0544 0.60 -0.3 616,532 + Psyr_0544 0.72 -0.7 616,532 + Psyr_0544 0.72 -0.2 616,533 - Psyr_0544 0.72 -0.6 616,533 - Psyr_0544 0.72 -0.4 616,637 + Psyr_0544 0.77 -1.2 616,638 - Psyr_0544 0.78 -1.8 616,638 - Psyr_0544 0.78 +0.6 616,638 - Psyr_0544 0.78 -1.2 616,703 + Psyr_0544 0.81 -1.4 616,703 + Psyr_0544 0.81 +0.9 616,703 + Psyr_0544 0.81 -1.2 616,703 + Psyr_0544 0.81 -0.3 616,703 + Psyr_0544 0.81 +0.9 616,703 + Psyr_0544 0.81 +1.0 616,703 + Psyr_0544 0.81 -0.7 616,704 - Psyr_0544 0.81 +0.3 616,704 - Psyr_0544 0.81 -0.2 616,704 - Psyr_0544 0.81 -0.8 616,704 - Psyr_0544 0.81 -0.2 616,847 + Psyr_0544 0.89 -1.8 616,953 - +1.3 617,038 + -0.1 617,048 + +0.3 617,048 + +0.1 617,048 + -0.9 617,049 - -0.9 617,049 - +0.3 617,049 - +0.2 617,049 - -0.5 617,049 - -2.4 617,060 + +3.2 617,060 + +0.8 617,060 + -0.4 617,060 + -0.8 617,081 + -0.1 617,083 + +0.2 617,083 + +0.2 617,083 + +1.2 617,083 + +2.3 617,083 + -0.0 617,083 + -3.1 617,083 + -0.2 617,083 + -0.1 617,083 + -2.3 617,083 + +1.2 617,083 + -0.3 617,084 - -0.5 617,084 - -0.0 617,084 - -1.0 617,084 - +0.1 617,084 - -0.9 617,084 - +0.1 617,084 - -0.7 617,084 - -0.4 617,117 + -1.0 617,117 + -0.6 617,161 - -0.7 617,161 - -0.0 617,172 + +0.9 617,173 - -0.8 617,173 - +0.2 617,173 - +0.4 617,189 + +0.0 617,189 + +1.0 617,190 - +0.3 617,190 - -1.0 617,190 - +0.2 617,190 - +0.1 617,190 - -0.5 617,371 + -0.4 617,371 + +0.5 617,371 + +0.1 617,402 - -2.3 617,499 + +0.8 617,499 + +0.0 617,499 + +0.9 617,500 - +1.9 617,500 - -1.0 617,512 + -0.6 617,512 + +0.2 617,512 + -0.7 617,512 + +0.7 617,513 - +0.9 617,513 - -0.1 617,513 - -0.2 617,513 - +1.0 617,513 - -1.8 617,513 - +0.7
Or see this region's nucleotide sequence