Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0439

Experiment: KB with Rotenone 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0437 and Psyr_0438 overlap by 26 nucleotidesPsyr_0438 and Psyr_0439 overlap by 25 nucleotidesPsyr_0439 and Psyr_0440 are separated by 309 nucleotides Psyr_0437: Psyr_0437 - acyl carrier protein, putative, at 475,287 to 475,547 _0437 Psyr_0438: Psyr_0438 - Phospholipid/glycerol acyltransferase, at 475,522 to 476,334 _0438 Psyr_0439: Psyr_0439 - conserved hypothetical protein, at 476,310 to 477,029 _0439 Psyr_0440: Psyr_0440 - Cobyrinic acid a,c-diamide synthase, at 477,339 to 478,118 _0440 Position (kb) 476 477 478Strain fitness (log2 ratio) -1 0 1 2at 475.460 kb on + strand, within Psyr_0437at 475.461 kb on - strand, within Psyr_0437at 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.572 kb on - strandat 475.572 kb on - strandat 475.584 kb on - strandat 475.584 kb on - strandat 475.645 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.919 kb on + strand, within Psyr_0438at 475.920 kb on - strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.288 kb on + strandat 476.288 kb on + strandat 476.289 kb on - strandat 476.289 kb on - strandat 476.291 kb on + strandat 476.291 kb on + strandat 476.527 kb on + strand, within Psyr_0439at 476.527 kb on + strand, within Psyr_0439at 476.566 kb on - strand, within Psyr_0439at 476.566 kb on - strand, within Psyr_0439at 476.566 kb on - strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.614 kb on + strand, within Psyr_0439at 476.615 kb on - strand, within Psyr_0439at 476.615 kb on - strand, within Psyr_0439at 477.066 kb on + strandat 477.067 kb on - strandat 477.141 kb on + strandat 477.141 kb on + strandat 477.141 kb on + strandat 477.142 kb on - strandat 477.145 kb on - strandat 477.160 kb on + strandat 477.160 kb on + strandat 477.161 kb on - strandat 477.181 kb on + strandat 477.181 kb on + strandat 477.181 kb on + strandat 477.181 kb on + strandat 477.182 kb on - strandat 477.182 kb on - strandat 477.256 kb on + strandat 477.257 kb on - strandat 477.267 kb on + strandat 477.268 kb on - strandat 477.268 kb on - strandat 477.437 kb on - strand, within Psyr_0440at 477.474 kb on + strand, within Psyr_0440at 477.576 kb on - strand, within Psyr_0440at 477.579 kb on + strand, within Psyr_0440at 477.579 kb on + strand, within Psyr_0440at 477.579 kb on + strand, within Psyr_0440at 477.579 kb on + strand, within Psyr_0440at 477.580 kb on - strand, within Psyr_0440at 477.580 kb on - strand, within Psyr_0440at 477.580 kb on - strand, within Psyr_0440at 477.580 kb on - strand, within Psyr_0440at 477.580 kb on - strand, within Psyr_0440at 477.716 kb on + strand, within Psyr_0440at 477.717 kb on - strand, within Psyr_0440at 477.829 kb on - strand, within Psyr_0440at 477.984 kb on + strand, within Psyr_0440at 477.984 kb on + strand, within Psyr_0440

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Rotenone 0.125 mg/ml
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475,460 + Psyr_0437 0.66 +0.9
475,461 - Psyr_0437 0.67 +0.2
475,523 + +0.2
475,523 + +0.1
475,523 + +0.3
475,523 + +0.5
475,523 + +0.4
475,523 + +0.5
475,571 + -0.5
475,571 + -1.1
475,571 + -0.1
475,571 + +0.4
475,571 + +0.8
475,571 + -0.0
475,571 + -0.5
475,571 + +0.5
475,572 - +1.9
475,572 - +0.6
475,584 - +0.7
475,584 - -0.4
475,645 + Psyr_0438 0.15 -0.3
475,645 + Psyr_0438 0.15 +0.1
475,645 + Psyr_0438 0.15 -0.5
475,646 - Psyr_0438 0.15 -1.2
475,646 - Psyr_0438 0.15 +1.7
475,646 - Psyr_0438 0.15 +0.9
475,646 - Psyr_0438 0.15 -0.9
475,646 - Psyr_0438 0.15 -0.2
475,646 - Psyr_0438 0.15 +0.6
475,919 + Psyr_0438 0.49 -0.1
475,920 - Psyr_0438 0.49 +0.1
476,093 + Psyr_0438 0.70 -0.5
476,093 + Psyr_0438 0.70 +0.6
476,093 + Psyr_0438 0.70 +0.2
476,093 + Psyr_0438 0.70 -0.1
476,093 + Psyr_0438 0.70 -0.9
476,093 + Psyr_0438 0.70 +0.6
476,093 + Psyr_0438 0.70 +0.3
476,093 + Psyr_0438 0.70 +0.3
476,093 + Psyr_0438 0.70 +0.9
476,093 + Psyr_0438 0.70 -0.5
476,094 - Psyr_0438 0.70 -0.9
476,094 - Psyr_0438 0.70 -1.1
476,094 - Psyr_0438 0.70 +1.5
476,094 - Psyr_0438 0.70 -0.4
476,288 + -0.3
476,288 + -1.0
476,289 - +0.2
476,289 - -0.4
476,291 + -0.6
476,291 + -0.1
476,527 + Psyr_0439 0.30 -1.5
476,527 + Psyr_0439 0.30 -0.8
476,566 - Psyr_0439 0.36 +1.4
476,566 - Psyr_0439 0.36 -0.6
476,566 - Psyr_0439 0.36 -0.4
476,614 + Psyr_0439 0.42 -1.0
476,614 + Psyr_0439 0.42 -1.4
476,614 + Psyr_0439 0.42 +0.2
476,614 + Psyr_0439 0.42 +0.5
476,614 + Psyr_0439 0.42 -0.9
476,615 - Psyr_0439 0.42 -0.2
476,615 - Psyr_0439 0.42 -0.3
477,066 + +0.4
477,067 - +0.4
477,141 + -0.0
477,141 + -0.0
477,141 + +0.1
477,142 - -1.2
477,145 - +0.7
477,160 + -0.5
477,160 + +0.8
477,161 - -1.1
477,181 + -0.5
477,181 + -0.0
477,181 + -0.4
477,181 + +0.0
477,182 - +0.6
477,182 - +0.3
477,256 + +0.7
477,257 - -0.7
477,267 + +0.5
477,268 - +0.1
477,268 - -0.2
477,437 - Psyr_0440 0.13 -0.2
477,474 + Psyr_0440 0.17 -0.2
477,576 - Psyr_0440 0.30 +0.1
477,579 + Psyr_0440 0.31 -1.2
477,579 + Psyr_0440 0.31 -0.5
477,579 + Psyr_0440 0.31 +0.5
477,579 + Psyr_0440 0.31 +0.1
477,580 - Psyr_0440 0.31 +1.1
477,580 - Psyr_0440 0.31 +0.1
477,580 - Psyr_0440 0.31 -0.7
477,580 - Psyr_0440 0.31 +0.2
477,580 - Psyr_0440 0.31 +0.1
477,716 + Psyr_0440 0.48 -0.6
477,717 - Psyr_0440 0.48 -0.5
477,829 - Psyr_0440 0.63 -0.3
477,984 + Psyr_0440 0.83 -0.5
477,984 + Psyr_0440 0.83 +0.8

Or see this region's nucleotide sequence