Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3996

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,108,649	+		Ga0059261_3995	0.32	-0.5
4,108,649	+		Ga0059261_3995	0.32	+0.2
4,108,649	+		Ga0059261_3995	0.32	+1.0
4,108,649	+		Ga0059261_3995	0.32	+0.5
4,108,650	-		Ga0059261_3995	0.32	+1.4
4,108,650	-		Ga0059261_3995	0.32	-1.9
4,108,650	-		Ga0059261_3995	0.32	+0.2
4,108,650	-		Ga0059261_3995	0.32	-1.4
4,108,736	+		Ga0059261_3995	0.39	-0.5
4,108,736	+		Ga0059261_3995	0.39	+0.0
4,108,736	+		Ga0059261_3995	0.39	-0.4
4,108,737	-		Ga0059261_3995	0.39	-0.4
4,108,737	-		Ga0059261_3995	0.39	+0.5
4,108,737	-		Ga0059261_3995	0.39	-0.4
4,108,952	+		Ga0059261_3995	0.56	+0.4
4,108,953	-		Ga0059261_3995	0.56	+1.9
4,109,264	+		Ga0059261_3995	0.81	-0.1
4,109,265	-		Ga0059261_3995	0.81	+0.9
4,109,265	-		Ga0059261_3995	0.81	+1.6
4,109,265	-		Ga0059261_3995	0.81	+0.5
4,109,265	-		Ga0059261_3995	0.81	+0.6
4,109,320	+		Ga0059261_3995	0.85	+0.1
4,109,320	+		Ga0059261_3995	0.85	-0.8
4,109,320	+		Ga0059261_3995	0.85	-0.8
4,109,320	+		Ga0059261_3995	0.85	-1.4
4,109,320	+		Ga0059261_3995	0.85	+0.6
4,109,321	-		Ga0059261_3995	0.86	-0.4
4,109,321	-		Ga0059261_3995	0.86	+0.9
4,109,321	-		Ga0059261_3995	0.86	+0.5
4,109,321	-		Ga0059261_3995	0.86	-0.2
4,109,321	-		Ga0059261_3995	0.86	+0.1
4,109,450	+				-0.3
4,109,450	+				-1.9
4,109,450	+				-0.7
4,109,451	-				+0.9
4,109,451	-				-0.0
4,109,451	-				-0.9
4,109,451	-				-0.4
4,109,451	-				-0.2
4,109,451	-				+0.3
4,109,451	-				-0.7
4,109,748	+		Ga0059261_3996	0.26	-1.8
4,109,748	+		Ga0059261_3996	0.26	+0.2
4,109,749	-		Ga0059261_3996	0.26	-0.6
4,109,749	-		Ga0059261_3996	0.26	+0.7
4,109,749	-		Ga0059261_3996	0.26	+0.3
4,109,749	-		Ga0059261_3996	0.26	+0.8
4,109,749	-		Ga0059261_3996	0.26	-0.5
4,109,749	-		Ga0059261_3996	0.26	-0.9
4,109,856	+		Ga0059261_3996	0.36	+0.2
4,109,856	+		Ga0059261_3996	0.36	-1.1
4,110,060	+		Ga0059261_3996	0.56	+0.6
4,110,061	-		Ga0059261_3996	0.57	-0.4
4,110,061	-		Ga0059261_3996	0.57	+0.9
4,110,061	-		Ga0059261_3996	0.57	-0.6
4,110,061	-		Ga0059261_3996	0.57	-0.7
4,110,086	+		Ga0059261_3996	0.59	+0.6
4,110,086	+		Ga0059261_3996	0.59	+0.6
4,110,086	+		Ga0059261_3996	0.59	+1.6
4,110,087	-		Ga0059261_3996	0.59	+0.8
4,110,087	-		Ga0059261_3996	0.59	+0.5
4,110,087	-		Ga0059261_3996	0.59	+0.0
4,110,087	-		Ga0059261_3996	0.59	+0.5
4,110,228	+		Ga0059261_3996	0.73	+0.1
4,110,228	+		Ga0059261_3996	0.73	-0.2
4,110,234	+		Ga0059261_3996	0.74	-0.7
4,110,234	+		Ga0059261_3996	0.74	+0.3
4,110,234	+		Ga0059261_3996	0.74	+0.4
4,110,234	+		Ga0059261_3996	0.74	-2.1
4,110,234	+		Ga0059261_3996	0.74	-0.3
4,110,234	+		Ga0059261_3996	0.74	+0.9
4,110,234	+		Ga0059261_3996	0.74	-1.3
4,110,234	+		Ga0059261_3996	0.74	-0.5
4,110,234	+		Ga0059261_3996	0.74	-0.2
4,110,234	+		Ga0059261_3996	0.74	-0.9
4,110,234	+		Ga0059261_3996	0.74	+1.3
4,110,234	+		Ga0059261_3996	0.74	-0.1
4,110,234	+		Ga0059261_3996	0.74	+1.5
4,110,235	-		Ga0059261_3996	0.74	-0.8
4,110,235	-		Ga0059261_3996	0.74	-0.4
4,110,235	-		Ga0059261_3996	0.74	-0.5
4,110,235	-		Ga0059261_3996	0.74	-1.0
4,110,235	-		Ga0059261_3996	0.74	-1.1
4,110,235	-		Ga0059261_3996	0.74	+0.9
4,110,235	-		Ga0059261_3996	0.74	+0.0
4,110,302	-		Ga0059261_3996	0.80	-0.8
4,110,450	+				-0.1
4,110,451	-				+0.4
4,110,451	-				-0.1
4,110,499	+				+0.3
4,110,499	+				-1.1
4,110,500	-				-1.2
4,110,500	-				-0.2
4,110,573	+				+0.4
4,110,574	-				+0.7
4,110,591	+				-0.0
4,110,591	+				-0.4
4,110,592	-				-0.4
4,110,592	-				+0.9
4,111,142	+		Ga0059261_3997	0.54	-0.7
4,111,142	+		Ga0059261_3997	0.54	+0.0
4,111,142	+		Ga0059261_3997	0.54	-0.4
4,111,142	+		Ga0059261_3997	0.54	-0.6
4,111,142	+		Ga0059261_3997	0.54	+0.6
4,111,142	+		Ga0059261_3997	0.54	-0.2
4,111,239	-		Ga0059261_3997	0.62	+1.0
4,111,295	-		Ga0059261_3997	0.66	+2.1
4,111,401	+		Ga0059261_3997	0.75	+0.6
4,111,401	+		Ga0059261_3997	0.75	-0.4
4,111,401	+		Ga0059261_3997	0.75	+0.6
4,111,402	-		Ga0059261_3997	0.75	-0.2
4,111,402	-		Ga0059261_3997	0.75	+1.1
4,111,402	-		Ga0059261_3997	0.75	+0.1
4,111,402	-		Ga0059261_3997	0.75	-0.6
4,111,495	-		Ga0059261_3997	0.83	+0.5