Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3938

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
4,053,188	+		Ga0059261_3937	0.32	-0.9
4,053,188	+		Ga0059261_3937	0.32	+0.2
4,053,188	+		Ga0059261_3937	0.32	-0.7
4,053,189	-		Ga0059261_3937	0.32	-1.4
4,053,189	-		Ga0059261_3937	0.32	-0.8
4,053,189	-		Ga0059261_3937	0.32	-0.1
4,053,189	-		Ga0059261_3937	0.32	-0.1
4,053,189	-		Ga0059261_3937	0.32	-1.1
4,053,189	-		Ga0059261_3937	0.32	+0.4
4,053,189	-		Ga0059261_3937	0.32	-2.3
4,053,312	+		Ga0059261_3937	0.40	+0.5
4,053,312	+		Ga0059261_3937	0.40	-0.1
4,053,313	-		Ga0059261_3937	0.40	+0.2
4,053,313	-		Ga0059261_3937	0.40	+1.3
4,053,396	+		Ga0059261_3937	0.46	-0.1
4,053,396	+		Ga0059261_3937	0.46	-2.2
4,053,397	-		Ga0059261_3937	0.46	-0.8
4,053,438	-		Ga0059261_3937	0.49	-1.0
4,053,478	-		Ga0059261_3937	0.52	-0.6
4,053,478	-		Ga0059261_3937	0.52	-1.1
4,053,478	-				+1.9
4,053,478	-		Ga0059261_3937	0.52	-1.6
4,053,478	-		Ga0059261_3937	0.52	-1.7
4,053,498	+		Ga0059261_3937	0.53	-2.3
4,053,498	+		Ga0059261_3937	0.53	-0.2
4,053,498	+				-1.1
4,053,498	+		Ga0059261_3937	0.53	-0.2
4,053,498	+		Ga0059261_3937	0.53	-1.2
4,053,498	+		Ga0059261_3937	0.53	-0.3
4,053,498	+		Ga0059261_3937	0.53	+0.1
4,053,498	+		Ga0059261_3937	0.53	-0.4
4,053,498	+		Ga0059261_3937	0.53	+0.3
4,053,499	-		Ga0059261_3937	0.54	-1.1
4,053,499	-		Ga0059261_3937	0.54	-2.6
4,053,499	-				-0.1
4,053,499	-		Ga0059261_3937	0.54	-1.3
4,053,499	-		Ga0059261_3937	0.54	-0.6
4,053,545	+		Ga0059261_3937	0.57	-1.0
4,053,545	+		Ga0059261_3937	0.57	-0.7
4,053,595	-		Ga0059261_3937	0.60	-1.2
4,053,627	-		Ga0059261_3937	0.63	-0.6
4,053,645	+		Ga0059261_3937	0.64	-0.3
4,053,646	-		Ga0059261_3937	0.64	-1.2
4,053,681	+		Ga0059261_3937	0.66	-0.2
4,053,681	+		Ga0059261_3937	0.66	-0.0
4,053,681	+		Ga0059261_3937	0.66	-0.9
4,053,682	-		Ga0059261_3937	0.66	-0.6
4,053,682	-		Ga0059261_3937	0.66	+0.3
4,053,682	-		Ga0059261_3937	0.66	-0.3
4,053,682	-		Ga0059261_3937	0.66	-0.1
4,053,682	-		Ga0059261_3937	0.66	-1.0
4,053,682	-		Ga0059261_3937	0.66	+0.4
4,053,682	-		Ga0059261_3937	0.66	-0.1
4,053,683	+				+0.9
4,053,683	+		Ga0059261_3937	0.66	-1.5
4,053,683	+		Ga0059261_3937	0.66	+0.5
4,053,683	+		Ga0059261_3937	0.66	-2.6
4,053,683	+		Ga0059261_3937	0.66	-0.6
4,053,683	+		Ga0059261_3937	0.66	+0.0
4,053,684	-		Ga0059261_3937	0.67	-0.7
4,053,684	-		Ga0059261_3937	0.67	-1.5
4,053,684	-		Ga0059261_3937	0.67	-1.5
4,053,684	-		Ga0059261_3937	0.67	-1.0
4,053,684	-		Ga0059261_3937	0.67	-0.1
4,053,762	+		Ga0059261_3937	0.72	-0.1
4,053,762	+		Ga0059261_3937	0.72	+0.6
4,053,762	+		Ga0059261_3937	0.72	-0.5
4,053,762	+				-0.7
4,053,762	+		Ga0059261_3937	0.72	-0.5
4,053,762	+		Ga0059261_3937	0.72	+0.5
4,053,763	-		Ga0059261_3937	0.72	-1.6
4,053,986	+				+1.5
4,053,987	-		Ga0059261_3937	0.88	-1.7
4,054,041	+				-1.5
4,054,042	-				-1.3
4,054,042	-				+0.5
4,054,083	+				+0.4
4,054,083	+				-0.8
4,054,083	+				+0.7
4,054,083	+				+0.5
4,054,083	+				-0.5
4,054,084	-				-0.9
4,054,084	-				-0.9
4,054,084	-				-0.8
4,054,084	-				-1.3
4,054,084	-				-0.3
4,054,084	-				-1.4
4,054,174	+				-0.8
4,054,175	-				-1.9
4,054,175	-				-0.8
4,054,175	-				-0.7
4,054,175	-				-1.2
4,054,175	-				-1.2
4,054,293	+				-1.1
4,054,294	-		Ga0059261_3938	0.10	-0.1
4,054,388	-		Ga0059261_3938	0.18	-1.9
4,054,463	-		Ga0059261_3938	0.23	-0.6
4,054,463	-		Ga0059261_3938	0.23	-2.3
4,054,495	-				-1.1
4,054,525	+		Ga0059261_3938	0.28	-0.1
4,054,525	+		Ga0059261_3938	0.28	-1.0
4,054,627	+		Ga0059261_3938	0.36	-0.8
4,054,670	+		Ga0059261_3938	0.39	-0.3
4,054,670	+		Ga0059261_3938	0.39	-0.2
4,054,670	+		Ga0059261_3938	0.39	-0.8
4,054,671	-		Ga0059261_3938	0.39	-1.0
4,054,671	-		Ga0059261_3938	0.39	-1.3
4,054,718	+		Ga0059261_3938	0.43	+0.2
4,054,718	+		Ga0059261_3938	0.43	+0.0
4,054,718	+		Ga0059261_3938	0.43	+0.2
4,054,718	+		Ga0059261_3938	0.43	-0.5
4,054,718	+		Ga0059261_3938	0.43	-0.8
4,054,719	-		Ga0059261_3938	0.43	-0.8
4,054,719	-		Ga0059261_3938	0.43	-2.5
4,054,719	-		Ga0059261_3938	0.43	-0.4
4,054,719	-		Ga0059261_3938	0.43	+0.4
4,054,719	-		Ga0059261_3938	0.43	-0.2
4,054,757	+		Ga0059261_3938	0.46	+0.0
4,054,758	-		Ga0059261_3938	0.46	-0.1
4,054,990	+		Ga0059261_3938	0.64	-0.4
4,054,990	+		Ga0059261_3938	0.64	-0.8
4,054,991	-		Ga0059261_3938	0.64	+0.1
4,055,145	+		Ga0059261_3938	0.76	-0.1
4,055,146	-		Ga0059261_3938	0.76	-0.5
4,055,153	+		Ga0059261_3938	0.76	-1.9
4,055,153	+		Ga0059261_3938	0.76	-0.4
4,055,153	+		Ga0059261_3938	0.76	-1.8
4,055,153	+		Ga0059261_3938	0.76	-0.9
4,055,153	+		Ga0059261_3938	0.76	-1.6
4,055,153	+		Ga0059261_3938	0.76	-1.3
4,055,154	-		Ga0059261_3938	0.76	-1.1
4,055,154	-		Ga0059261_3938	0.76	-1.3
4,055,415	-				-1.7
4,055,415	-				-1.1
4,055,450	+				-1.0
4,055,450	+				-1.7
4,055,451	-				-0.1
4,055,451	-				-0.9
4,055,533	+		Ga0059261_3939	0.11	-1.5
4,055,533	+		Ga0059261_3939	0.11	+0.2
4,055,533	+		Ga0059261_3939	0.11	-0.7
4,055,533	+		Ga0059261_3939	0.11	-0.7
4,055,533	+		Ga0059261_3939	0.11	-1.1
4,055,533	+		Ga0059261_3939	0.11	+0.0
4,055,533	+		Ga0059261_3939	0.11	-1.8
4,055,533	+				-1.4
4,055,534	-		Ga0059261_3939	0.11	-1.2
4,055,534	-				-0.4
4,055,633	+		Ga0059261_3939	0.26	-0.1
4,055,633	+		Ga0059261_3939	0.26	-0.4
4,055,634	-		Ga0059261_3939	0.26	-1.7
4,055,634	-		Ga0059261_3939	0.26	-1.1
4,055,641	+		Ga0059261_3939	0.27	-0.8
4,055,641	+		Ga0059261_3939	0.27	-0.7
4,055,642	-		Ga0059261_3939	0.27	-2.3
4,055,767	+		Ga0059261_3939	0.46	+0.3
4,055,768	-		Ga0059261_3939	0.46	-2.0
4,055,768	-		Ga0059261_3939	0.46	+1.6
4,055,768	-		Ga0059261_3939	0.46	-3.0
4,055,808	+		Ga0059261_3939	0.53	-2.9
4,055,923	+		Ga0059261_3939	0.70	-1.8
4,056,276	+		Ga0059261_3940	0.35	-0.3
4,056,276	+		Ga0059261_3940	0.35	+0.7
4,056,276	+		Ga0059261_3940	0.35	-0.3
4,056,276	+		Ga0059261_3940	0.35	+0.3
4,056,276	+		Ga0059261_3940	0.35	+0.2
4,056,276	+		Ga0059261_3940	0.35	+0.6
4,056,276	+		Ga0059261_3940	0.35	-0.1
4,056,276	+		Ga0059261_3940	0.35	+0.4
4,056,276	+		Ga0059261_3940	0.35	+0.9
4,056,277	-		Ga0059261_3940	0.36	+1.5
4,056,277	-		Ga0059261_3940	0.36	-0.0
4,056,277	-		Ga0059261_3940	0.36	-0.5
4,056,277	-		Ga0059261_3940	0.36	-1.9
4,056,277	-		Ga0059261_3940	0.36	+0.1
4,056,277	-		Ga0059261_3940	0.36	+0.5
4,056,277	-		Ga0059261_3940	0.36	+0.7
4,056,383	+		Ga0059261_3940	0.66	-0.1
4,056,383	+		Ga0059261_3940	0.66	+0.3
4,056,383	+		Ga0059261_3940	0.66	+0.1
4,056,420	+		Ga0059261_3940	0.77	+1.2
4,056,420	+		Ga0059261_3940	0.77	+1.3
4,056,420	+		Ga0059261_3940	0.77	+0.7
4,056,421	-		Ga0059261_3940	0.77	+0.7
4,056,421	-		Ga0059261_3940	0.77	+1.1
4,056,421	-		Ga0059261_3940	0.77	-0.6
4,056,421	-		Ga0059261_3940	0.77	+0.2
4,056,421	-		Ga0059261_3940	0.77	-0.5