Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3850

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,951,058	+		Ga0059261_3849	0.29	+0.1
3,951,058	+		Ga0059261_3849	0.29	-0.1
3,951,059	-		Ga0059261_3849	0.29	+0.6
3,951,059	-		Ga0059261_3849	0.29	+0.9
3,951,149	-		Ga0059261_3849	0.36	+0.5
3,951,149	-		Ga0059261_3849	0.36	+0.1
3,951,149	-		Ga0059261_3849	0.36	+0.3
3,951,149	-		Ga0059261_3849	0.36	+1.2
3,951,208	+		Ga0059261_3849	0.40	+0.0
3,951,222	+		Ga0059261_3849	0.41	+0.3
3,951,222	+		Ga0059261_3849	0.41	-0.3
3,951,222	+		Ga0059261_3849	0.41	+1.0
3,951,222	+		Ga0059261_3849	0.41	+0.4
3,951,222	+		Ga0059261_3849	0.41	+0.8
3,951,222	+		Ga0059261_3849	0.41	+0.8
3,951,222	+		Ga0059261_3849	0.41	+1.0
3,951,222	+		Ga0059261_3849	0.41	+0.4
3,951,223	-		Ga0059261_3849	0.41	-0.4
3,951,223	-		Ga0059261_3849	0.41	-0.3
3,951,240	+				+0.9
3,951,240	+		Ga0059261_3849	0.42	+0.1
3,951,241	-		Ga0059261_3849	0.42	-0.0
3,951,241	-		Ga0059261_3849	0.42	+0.3
3,951,241	-		Ga0059261_3849	0.42	-0.6
3,951,291	+		Ga0059261_3849	0.46	+0.4
3,951,291	+		Ga0059261_3849	0.46	-0.6
3,951,292	-		Ga0059261_3849	0.46	-0.2
3,951,292	-		Ga0059261_3849	0.46	-0.4
3,951,292	-		Ga0059261_3849	0.46	-0.9
3,951,334	-		Ga0059261_3849	0.49	+0.0
3,951,501	+		Ga0059261_3849	0.61	-0.7
3,951,501	+		Ga0059261_3849	0.61	-0.0
3,951,501	+		Ga0059261_3849	0.61	-0.0
3,951,501	+		Ga0059261_3849	0.61	+0.6
3,951,501	+		Ga0059261_3849	0.61	-0.2
3,951,502	-		Ga0059261_3849	0.61	+1.1
3,951,502	-		Ga0059261_3849	0.61	-0.1
3,951,502	-		Ga0059261_3849	0.61	+0.7
3,951,502	-		Ga0059261_3849	0.61	+0.7
3,951,502	-		Ga0059261_3849	0.61	-0.4
3,951,502	-		Ga0059261_3849	0.61	-0.4
3,951,502	-		Ga0059261_3849	0.61	+0.3
3,951,528	+		Ga0059261_3849	0.62	-0.0
3,951,529	-		Ga0059261_3849	0.62	-0.3
3,951,529	-				+1.9
3,951,671	+		Ga0059261_3849	0.73	-0.0
3,951,671	+		Ga0059261_3849	0.73	-0.1
3,951,729	+		Ga0059261_3849	0.77	+0.1
3,951,729	+		Ga0059261_3849	0.77	+1.7
3,951,729	+		Ga0059261_3849	0.77	-1.0
3,951,729	+		Ga0059261_3849	0.77	+0.2
3,951,729	+		Ga0059261_3849	0.77	-0.6
3,951,730	-		Ga0059261_3849	0.77	-0.1
3,951,730	-		Ga0059261_3849	0.77	+0.2
3,951,816	+		Ga0059261_3849	0.83	+0.1
3,951,816	+		Ga0059261_3849	0.83	+2.2
3,951,816	+		Ga0059261_3849	0.83	+0.3
3,951,816	+		Ga0059261_3849	0.83	+0.3
3,951,816	+		Ga0059261_3849	0.83	+0.0
3,951,817	-		Ga0059261_3849	0.83	+0.3
3,951,817	-		Ga0059261_3849	0.83	-0.7
3,951,817	-		Ga0059261_3849	0.83	-0.5
3,951,819	+		Ga0059261_3849	0.83	+0.1
3,951,819	+		Ga0059261_3849	0.83	+0.9
3,951,819	+		Ga0059261_3849	0.83	+0.1
3,951,820	-		Ga0059261_3849	0.83	-0.7
3,951,820	-		Ga0059261_3849	0.83	+1.0
3,952,005	+				+0.2
3,952,006	-				-0.9
3,952,006	-				+0.3
3,952,007	+				+0.6
3,952,007	+				-0.1
3,952,007	+				+0.7
3,952,007	+				+0.1
3,952,008	-				-0.7
3,952,008	-				+0.5
3,952,187	-		Ga0059261_3850	0.12	-0.1
3,952,192	+		Ga0059261_3850	0.12	+0.3
3,952,192	+		Ga0059261_3850	0.12	-0.3
3,952,193	-		Ga0059261_3850	0.12	-1.2
3,952,193	-		Ga0059261_3850	0.12	+0.2
3,952,193	-		Ga0059261_3850	0.12	-0.2
3,952,193	-		Ga0059261_3850	0.12	-0.5
3,952,193	-		Ga0059261_3850	0.12	+0.6
3,952,193	-		Ga0059261_3850	0.12	-0.4
3,952,193	-		Ga0059261_3850	0.12	+0.1
3,952,193	-		Ga0059261_3850	0.12	-0.1
3,952,193	-		Ga0059261_3850	0.12	+0.1
3,952,193	-		Ga0059261_3850	0.12	-0.1
3,952,193	-		Ga0059261_3850	0.12	+0.6
3,952,193	-		Ga0059261_3850	0.12	+0.4
3,952,297	-		Ga0059261_3850	0.20	-0.0
3,952,297	-		Ga0059261_3850	0.20	-1.2
3,952,297	-		Ga0059261_3850	0.20	-0.3
3,952,297	-		Ga0059261_3850	0.20	-0.4
3,952,362	+		Ga0059261_3850	0.25	+0.2
3,952,362	+		Ga0059261_3850	0.25	+0.1
3,952,362	+		Ga0059261_3850	0.25	+0.1
3,952,363	-		Ga0059261_3850	0.25	+0.1
3,952,363	-		Ga0059261_3850	0.25	-0.5
3,952,363	-		Ga0059261_3850	0.25	+0.1
3,952,363	-		Ga0059261_3850	0.25	-0.1
3,952,363	-		Ga0059261_3850	0.25	-2.0
3,952,754	+		Ga0059261_3850	0.56	+0.1
3,952,754	+		Ga0059261_3850	0.56	-0.3
3,952,754	+		Ga0059261_3850	0.56	-0.4
3,952,754	+		Ga0059261_3850	0.56	-0.3
3,952,755	-		Ga0059261_3850	0.56	-0.2
3,952,755	-		Ga0059261_3850	0.56	+0.1
3,952,755	-		Ga0059261_3850	0.56	-0.1
3,952,771	-		Ga0059261_3850	0.57	-0.1
3,952,771	-		Ga0059261_3850	0.57	-0.1
3,952,771	-		Ga0059261_3850	0.57	-1.0
3,952,847	+		Ga0059261_3850	0.63	+0.2
3,952,847	+		Ga0059261_3850	0.63	-0.3
3,952,847	+		Ga0059261_3850	0.63	-0.3
3,952,847	+		Ga0059261_3850	0.63	-0.7
3,952,847	+		Ga0059261_3850	0.63	+0.2
3,952,848	-		Ga0059261_3850	0.64	-0.6
3,952,848	-		Ga0059261_3850	0.64	+0.6
3,952,848	-		Ga0059261_3850	0.64	+0.6
3,952,848	-		Ga0059261_3850	0.64	+0.3
3,952,848	-		Ga0059261_3850	0.64	-0.1
3,952,848	-		Ga0059261_3850	0.64	+0.2
3,952,848	-		Ga0059261_3850	0.64	+0.5
3,952,848	-		Ga0059261_3850	0.64	-0.1
3,952,848	-		Ga0059261_3850	0.64	+0.6
3,952,848	-		Ga0059261_3850	0.64	-0.5
3,952,862	+		Ga0059261_3850	0.65	+0.0
3,952,862	+		Ga0059261_3850	0.65	-0.1
3,952,863	-		Ga0059261_3850	0.65	+0.3
3,953,065	-		Ga0059261_3850	0.81	-0.2
3,953,213	+				-0.4
3,953,213	+				+0.1
3,953,214	-				+0.2
3,953,219	+				+0.2
3,953,219	+				-0.1
3,953,219	+				-0.4
3,953,219	+				-0.2
3,953,219	+				-0.4
3,953,220	-				+0.8
3,953,220	-				+1.1
3,953,220	-				-0.5
3,953,220	-				+0.6
3,953,220	-				-0.4
3,953,220	-				-0.9
3,953,220	-				-0.6
3,953,220	-				+0.0
3,953,221	+				+0.1
3,953,221	+				+0.7
3,953,222	-				+0.2
3,953,222	-				+0.2
3,953,314	+				-0.4
3,953,315	-				+0.9
3,953,315	-				-0.0
3,953,319	+				+0.6
3,953,319	+				+0.0
3,953,319	+				+0.6
3,953,320	-				+1.1
3,953,320	-				+1.2
3,953,436	+				-0.2
3,953,454	+				-0.1
3,953,455	-				-1.1
3,953,455	-				+1.2
3,953,626	-				-0.1
3,953,626	-				-0.4
3,953,645	+				+0.1
3,953,645	+				-1.8
3,953,645	+				+0.1
3,953,646	-				-1.1
3,953,646	-				+0.1
3,953,646	-				+0.1
3,953,646	-				-1.3
3,953,903	+		Ga0059261_3851	0.16	-0.7
3,953,903	+		Ga0059261_3851	0.16	-0.3
3,953,904	-		Ga0059261_3851	0.16	+0.4
3,953,904	-		Ga0059261_3851	0.16	-0.2
3,953,957	+		Ga0059261_3851	0.19	-0.2
3,953,957	+		Ga0059261_3851	0.19	+0.1
3,953,966	+		Ga0059261_3851	0.20	+0.5
3,953,967	-				+0.5
3,954,002	+		Ga0059261_3851	0.22	-0.7
3,954,002	+		Ga0059261_3851	0.22	-0.6
3,954,002	+		Ga0059261_3851	0.22	+0.9
3,954,002	+		Ga0059261_3851	0.22	+0.6
3,954,003	-		Ga0059261_3851	0.22	+0.5
3,954,003	-		Ga0059261_3851	0.22	-0.0
3,954,045	+		Ga0059261_3851	0.25	-0.6
3,954,045	+		Ga0059261_3851	0.25	+0.2
3,954,045	+		Ga0059261_3851	0.25	-0.1
3,954,045	+		Ga0059261_3851	0.25	-1.3
3,954,046	-		Ga0059261_3851	0.25	+0.4
3,954,046	-		Ga0059261_3851	0.25	+0.6
3,954,046	-		Ga0059261_3851	0.25	-0.2
3,954,046	-		Ga0059261_3851	0.25	+0.5
3,954,046	-		Ga0059261_3851	0.25	-0.6
3,954,046	-		Ga0059261_3851	0.25	-0.8
3,954,046	-		Ga0059261_3851	0.25	+0.1
3,954,046	-		Ga0059261_3851	0.25	+0.0
3,954,046	-		Ga0059261_3851	0.25	-0.5
3,954,046	-		Ga0059261_3851	0.25	+0.1
3,954,046	-		Ga0059261_3851	0.25	+0.6
3,954,046	-		Ga0059261_3851	0.25	+0.2
3,954,048	-		Ga0059261_3851	0.25	+0.3
3,954,077	+		Ga0059261_3851	0.27	-0.6
3,954,077	+		Ga0059261_3851	0.27	+0.3
3,954,077	+		Ga0059261_3851	0.27	-0.3
3,954,077	+		Ga0059261_3851	0.27	-0.1
3,954,077	+		Ga0059261_3851	0.27	-0.4
3,954,078	-		Ga0059261_3851	0.27	+0.1
3,954,078	-		Ga0059261_3851	0.27	+0.0
3,954,079	-		Ga0059261_3851	0.27	-0.1
3,954,293	+		Ga0059261_3851	0.41	+0.6
3,954,293	+		Ga0059261_3851	0.41	-2.0
3,954,293	+		Ga0059261_3851	0.41	-0.4
3,954,293	+		Ga0059261_3851	0.41	+0.3
3,954,293	+		Ga0059261_3851	0.41	-0.0
3,954,293	+		Ga0059261_3851	0.41	+0.2
3,954,294	-		Ga0059261_3851	0.41	+0.4
3,954,294	-		Ga0059261_3851	0.41	+1.4
3,954,294	-		Ga0059261_3851	0.41	-0.1
3,954,294	-		Ga0059261_3851	0.41	-0.2