Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3810

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,912,046	+		Ga0059261_3809	0.12	+0.3
3,912,046	+		Ga0059261_3809	0.12	+0.2
3,912,047	-		Ga0059261_3809	0.12	-0.1
3,912,122	+		Ga0059261_3809	0.24	+0.6
3,912,122	+		Ga0059261_3809	0.24	-1.1
3,912,122	+		Ga0059261_3809	0.24	+0.3
3,912,123	-		Ga0059261_3809	0.25	+0.5
3,912,201	+		Ga0059261_3809	0.37	-0.2
3,912,202	-		Ga0059261_3809	0.38	-1.3
3,912,307	+		Ga0059261_3809	0.55	-0.2
3,912,308	-		Ga0059261_3809	0.55	-0.1
3,912,308	-		Ga0059261_3809	0.55	-0.2
3,912,370	+		Ga0059261_3809	0.65	+0.7
3,912,370	+		Ga0059261_3809	0.65	-0.3
3,912,371	-		Ga0059261_3809	0.66	-0.0
3,912,371	-		Ga0059261_3809	0.66	-0.2
3,912,371	-		Ga0059261_3809	0.66	-1.6
3,912,382	+		Ga0059261_3809	0.67	-0.0
3,912,382	+		Ga0059261_3809	0.67	-0.4
3,912,382	+		Ga0059261_3809	0.67	-0.0
3,912,382	+		Ga0059261_3809	0.67	+0.9
3,912,382	+		Ga0059261_3809	0.67	-0.3
3,912,383	-		Ga0059261_3809	0.67	-0.2
3,912,383	-		Ga0059261_3809	0.67	+1.1
3,912,383	-		Ga0059261_3809	0.67	+0.1
3,912,383	-		Ga0059261_3809	0.67	-0.1
3,912,389	-		Ga0059261_3809	0.68	+0.6
3,912,468	+		Ga0059261_3809	0.82	+0.3
3,912,468	+		Ga0059261_3809	0.82	-0.3
3,912,468	+		Ga0059261_3809	0.82	+0.4
3,912,468	+		Ga0059261_3809	0.82	-0.2
3,912,468	+		Ga0059261_3809	0.82	-0.5
3,912,469	-		Ga0059261_3809	0.82	-0.2
3,912,469	-		Ga0059261_3809	0.82	-0.3
3,912,469	-		Ga0059261_3809	0.82	+0.9
3,912,582	+				+0.6
3,912,582	+				+0.6
3,912,583	-				-0.3
3,912,583	-				-0.2
3,912,638	+		Ga0059261_3810	0.12	+1.3
3,912,638	+		Ga0059261_3810	0.12	-1.2
3,912,638	+		Ga0059261_3810	0.12	+0.1
3,912,682	-		Ga0059261_3810	0.21	+0.3
3,912,909	+		Ga0059261_3810	0.68	+0.3
3,912,909	+		Ga0059261_3810	0.68	-0.6
3,912,909	+		Ga0059261_3810	0.68	+2.1
3,912,909	+		Ga0059261_3810	0.68	+0.1
3,912,910	-		Ga0059261_3810	0.68	+0.6
3,912,910	-		Ga0059261_3810	0.68	-0.8
3,912,910	-		Ga0059261_3810	0.68	-1.1
3,912,910	-		Ga0059261_3810	0.68	-0.3
3,912,993	+		Ga0059261_3810	0.85	-0.1
3,912,994	-		Ga0059261_3810	0.86	+0.9
3,913,004	+		Ga0059261_3810	0.88	-0.4
3,913,088	+				+0.1
3,913,089	-				+0.1
3,913,089	-				-0.7
3,913,278	+		Ga0059261_3811	0.11	-0.7
3,913,278	+		Ga0059261_3811	0.11	+0.7
3,913,279	-		Ga0059261_3811	0.11	-2.1
3,913,279	-		Ga0059261_3811	0.11	+0.7
3,913,279	-		Ga0059261_3811	0.11	+0.3
3,913,279	-		Ga0059261_3811	0.11	+0.3
3,913,279	-		Ga0059261_3811	0.11	+0.9
3,913,292	-		Ga0059261_3811	0.12	-0.5
3,913,367	+		Ga0059261_3811	0.19	-0.0
3,913,367	+		Ga0059261_3811	0.19	-0.4
3,913,367	+		Ga0059261_3811	0.19	-0.2
3,913,367	+		Ga0059261_3811	0.19	+0.1
3,913,368	-		Ga0059261_3811	0.19	-0.2
3,913,368	-		Ga0059261_3811	0.19	-0.7
3,913,400	+		Ga0059261_3811	0.22	+0.3
3,913,400	+		Ga0059261_3811	0.22	-0.4
3,913,400	+		Ga0059261_3811	0.22	-0.5
3,913,400	+		Ga0059261_3811	0.22	-2.7
3,913,401	-		Ga0059261_3811	0.22	-2.1
3,913,401	-		Ga0059261_3811	0.22	-0.3
3,913,401	-		Ga0059261_3811	0.22	+0.2
3,913,405	+		Ga0059261_3811	0.22	-0.0
3,913,405	+		Ga0059261_3811	0.22	-0.4
3,913,580	+		Ga0059261_3811	0.39	+0.5
3,913,581	-		Ga0059261_3811	0.39	-1.2
3,913,581	-		Ga0059261_3811	0.39	+0.4
3,913,581	-				+0.9
3,913,640	+				-1.4
3,913,640	+		Ga0059261_3811	0.44	-0.7
3,913,640	+		Ga0059261_3811	0.44	-0.4
3,913,641	-		Ga0059261_3811	0.44	-0.9
3,913,646	+		Ga0059261_3811	0.45	-0.8
3,913,646	+		Ga0059261_3811	0.45	-1.0
3,913,647	-		Ga0059261_3811	0.45	+0.5
3,913,677	-		Ga0059261_3811	0.47	+0.9
3,913,677	-		Ga0059261_3811	0.47	+0.3
3,913,677	-		Ga0059261_3811	0.47	-0.0
3,913,724	+		Ga0059261_3811	0.52	+0.1
3,913,724	+		Ga0059261_3811	0.52	-0.4
3,913,724	+		Ga0059261_3811	0.52	-0.7
3,913,725	-		Ga0059261_3811	0.52	-0.1
3,913,725	-		Ga0059261_3811	0.52	-0.2
3,913,725	-		Ga0059261_3811	0.52	-0.9
3,913,725	-		Ga0059261_3811	0.52	-0.1
3,913,725	-		Ga0059261_3811	0.52	-0.1
3,913,726	+		Ga0059261_3811	0.52	-0.1
3,913,727	-		Ga0059261_3811	0.52	+0.7
3,913,727	-		Ga0059261_3811	0.52	-1.2
3,913,775	+		Ga0059261_3811	0.56	-0.2
3,913,775	+		Ga0059261_3811	0.56	-0.1
3,913,775	+		Ga0059261_3811	0.56	-0.2
3,913,775	+		Ga0059261_3811	0.56	+0.3
3,913,775	+		Ga0059261_3811	0.56	+0.1
3,913,775	+		Ga0059261_3811	0.56	-0.4
3,913,775	+		Ga0059261_3811	0.56	-0.0
3,913,775	+		Ga0059261_3811	0.56	-0.6
3,913,776	-		Ga0059261_3811	0.57	-0.6
3,913,776	-		Ga0059261_3811	0.57	+0.1
3,913,776	-		Ga0059261_3811	0.57	-0.5
3,913,776	-		Ga0059261_3811	0.57	+1.6
3,913,776	-		Ga0059261_3811	0.57	+0.4
3,913,776	-		Ga0059261_3811	0.57	-0.7
3,914,015	+		Ga0059261_3811	0.79	+0.1
3,914,015	+		Ga0059261_3811	0.79	+0.1
3,914,016	-		Ga0059261_3811	0.79	-1.2
3,914,016	-		Ga0059261_3811	0.79	-0.4