Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3367

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3365 and Ga0059261_3366 overlap by 4 nucleotidesGa0059261_3366 and Ga0059261_3367 overlap by 4 nucleotidesGa0059261_3367 and Ga0059261_3368 are separated by 99 nucleotidesGa0059261_3368 and Ga0059261_3369 are separated by 14 nucleotides Ga0059261_3365: Ga0059261_3365 - hypothetical protein, at 3,495,569 to 3,496,630 _3365 Ga0059261_3366: Ga0059261_3366 - hypothetical protein, at 3,496,627 to 3,496,941 _3366 Ga0059261_3367: Ga0059261_3367 - hypothetical protein, at 3,496,938 to 3,497,126 _3367 Ga0059261_3368: Ga0059261_3368 - Predicted transcriptional regulator, at 3,497,226 to 3,497,846 _3368 Ga0059261_3369: Ga0059261_3369 - Lysophospholipase, at 3,497,861 to 3,499,042 _3369 Position (kb) 3496 3497 3498Strain fitness (log2 ratio) -2 -1 0 1at 3496.008 kb on + strand, within Ga0059261_3365at 3496.008 kb on + strand, within Ga0059261_3365at 3496.008 kb on + strand, within Ga0059261_3365at 3496.009 kb on - strand, within Ga0059261_3365at 3496.009 kb on - strand, within Ga0059261_3365at 3496.628 kb on + strandat 3496.628 kb on + strandat 3496.629 kb on - strandat 3496.629 kb on - strandat 3496.629 kb on - strandat 3496.629 kb on - strandat 3496.654 kb on + strandat 3496.655 kb on - strandat 3496.655 kb on - strandat 3496.697 kb on - strand, within Ga0059261_3366at 3496.764 kb on + strand, within Ga0059261_3366at 3496.764 kb on + strand, within Ga0059261_3366at 3496.765 kb on - strand, within Ga0059261_3366at 3496.765 kb on - strand, within Ga0059261_3366at 3496.894 kb on + strand, within Ga0059261_3366at 3496.895 kb on - strand, within Ga0059261_3366at 3497.098 kb on + strand, within Ga0059261_3367at 3497.098 kb on + strand, within Ga0059261_3367at 3497.098 kb on + strand, within Ga0059261_3367at 3497.098 kb on + strand, within Ga0059261_3367at 3497.098 kb on + strand, within Ga0059261_3367at 3497.098 kb on + strand, within Ga0059261_3367at 3497.099 kb on - strand, within Ga0059261_3367at 3497.099 kb on - strand, within Ga0059261_3367at 3497.099 kb on - strand, within Ga0059261_3367at 3497.214 kb on + strandat 3497.325 kb on + strand, within Ga0059261_3368at 3497.326 kb on - strand, within Ga0059261_3368at 3497.326 kb on - strand, within Ga0059261_3368at 3497.397 kb on + strand, within Ga0059261_3368at 3497.398 kb on - strand, within Ga0059261_3368at 3497.450 kb on - strand, within Ga0059261_3368at 3497.682 kb on + strand, within Ga0059261_3368at 3497.682 kb on + strand, within Ga0059261_3368at 3497.682 kb on + strand, within Ga0059261_3368at 3497.682 kb on + strandat 3497.682 kb on + strand, within Ga0059261_3368at 3497.682 kb on + strand, within Ga0059261_3368at 3497.682 kb on + strand, within Ga0059261_3368at 3497.682 kb on + strand, within Ga0059261_3368at 3497.682 kb on + strand, within Ga0059261_3368at 3497.683 kb on - strand, within Ga0059261_3368at 3497.683 kb on - strand, within Ga0059261_3368at 3497.844 kb on + strandat 3497.844 kb on + strandat 3497.894 kb on + strandat 3497.895 kb on - strandat 3498.094 kb on - strand, within Ga0059261_3369

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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3,496,008 + Ga0059261_3365 0.41 +0.5
3,496,008 + Ga0059261_3365 0.41 +0.1
3,496,008 + Ga0059261_3365 0.41 -0.3
3,496,009 - Ga0059261_3365 0.41 -0.6
3,496,009 - Ga0059261_3365 0.41 +0.1
3,496,628 + +0.2
3,496,628 + -0.4
3,496,629 - +0.1
3,496,629 - +0.5
3,496,629 - -0.1
3,496,629 - -0.0
3,496,654 + -0.1
3,496,655 - +0.4
3,496,655 - -1.0
3,496,697 - Ga0059261_3366 0.22 -0.4
3,496,764 + Ga0059261_3366 0.43 -0.3
3,496,764 + Ga0059261_3366 0.43 -0.3
3,496,765 - Ga0059261_3366 0.44 +0.4
3,496,765 - Ga0059261_3366 0.44 +0.7
3,496,894 + Ga0059261_3366 0.85 -0.3
3,496,895 - Ga0059261_3366 0.85 +1.3
3,497,098 + Ga0059261_3367 0.85 +0.4
3,497,098 + Ga0059261_3367 0.85 +0.9
3,497,098 + Ga0059261_3367 0.85 -2.4
3,497,098 + Ga0059261_3367 0.85 +0.1
3,497,098 + Ga0059261_3367 0.85 +0.7
3,497,098 + Ga0059261_3367 0.85 +0.7
3,497,099 - Ga0059261_3367 0.85 -0.2
3,497,099 - Ga0059261_3367 0.85 +0.0
3,497,099 - Ga0059261_3367 0.85 +0.4
3,497,214 + +0.7
3,497,325 + Ga0059261_3368 0.16 +0.5
3,497,326 - Ga0059261_3368 0.16 -1.5
3,497,326 - Ga0059261_3368 0.16 +1.5
3,497,397 + Ga0059261_3368 0.28 +0.3
3,497,398 - Ga0059261_3368 0.28 -0.9
3,497,450 - Ga0059261_3368 0.36 -0.2
3,497,682 + Ga0059261_3368 0.73 +0.3
3,497,682 + Ga0059261_3368 0.73 -0.1
3,497,682 + Ga0059261_3368 0.73 -0.2
3,497,682 + +0.9
3,497,682 + Ga0059261_3368 0.73 +0.1
3,497,682 + Ga0059261_3368 0.73 +0.7
3,497,682 + Ga0059261_3368 0.73 -0.4
3,497,682 + Ga0059261_3368 0.73 -0.8
3,497,682 + Ga0059261_3368 0.73 -1.4
3,497,683 - Ga0059261_3368 0.74 +0.8
3,497,683 - Ga0059261_3368 0.74 +0.2
3,497,844 + -0.7
3,497,844 + -0.1
3,497,894 + +0.5
3,497,895 - -0.3
3,498,094 - Ga0059261_3369 0.20 +1.0

Or see this region's nucleotide sequence