Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3356

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,486,556	+				+0.4
3,486,556	+				+0.5
3,486,556	+				-0.6
3,486,557	-				-0.4
3,486,557	-				-0.3
3,486,557	-				+0.2
3,486,573	-				-0.2
3,486,573	-				+0.1
3,486,835	+		Ga0059261_3355	0.30	+0.7
3,486,835	+		Ga0059261_3355	0.30	+1.1
3,486,836	-		Ga0059261_3355	0.30	-0.5
3,486,868	+		Ga0059261_3355	0.33	-0.0
3,486,868	+		Ga0059261_3355	0.33	+1.1
3,486,869	-		Ga0059261_3355	0.33	+0.4
3,486,869	-		Ga0059261_3355	0.33	+0.1
3,486,869	-				+0.5
3,486,869	-		Ga0059261_3355	0.33	-0.6
3,486,871	+		Ga0059261_3355	0.34	+0.6
3,486,871	+		Ga0059261_3355	0.34	+0.6
3,486,871	+		Ga0059261_3355	0.34	+0.6
3,486,871	+		Ga0059261_3355	0.34	+0.8
3,486,872	-		Ga0059261_3355	0.34	+0.4
3,486,887	+		Ga0059261_3355	0.35	-0.2
3,486,888	-		Ga0059261_3355	0.35	-0.0
3,486,947	+		Ga0059261_3355	0.42	-1.0
3,486,947	+		Ga0059261_3355	0.42	-0.3
3,486,947	+		Ga0059261_3355	0.42	+0.2
3,486,947	+		Ga0059261_3355	0.42	-0.0
3,486,947	+		Ga0059261_3355	0.42	-0.1
3,486,948	-				-0.0
3,486,949	+		Ga0059261_3355	0.42	+1.2
3,486,949	+		Ga0059261_3355	0.42	-0.0
3,486,949	+				-1.0
3,486,950	-		Ga0059261_3355	0.42	-1.0
3,486,950	-		Ga0059261_3355	0.42	+0.6
3,486,950	-		Ga0059261_3355	0.42	-1.0
3,486,970	+		Ga0059261_3355	0.44	+0.5
3,486,971	-		Ga0059261_3355	0.44	-1.2
3,487,132	+		Ga0059261_3355	0.61	+0.6
3,487,132	+				-0.6
3,487,133	-		Ga0059261_3355	0.61	-0.4
3,487,133	-		Ga0059261_3355	0.61	-0.0
3,487,135	+		Ga0059261_3355	0.62	+0.3
3,487,135	+		Ga0059261_3355	0.62	-0.2
3,487,135	+		Ga0059261_3355	0.62	-0.4
3,487,135	+				+1.3
3,487,136	-		Ga0059261_3355	0.62	-1.4
3,487,136	-		Ga0059261_3355	0.62	+0.4
3,487,339	+		Ga0059261_3355	0.83	-0.2
3,487,339	+		Ga0059261_3355	0.83	-0.3
3,487,339	+		Ga0059261_3355	0.83	-1.2
3,487,340	-		Ga0059261_3355	0.83	-0.3
3,487,340	-				+0.4
3,487,340	-		Ga0059261_3355	0.83	+0.2
3,487,594	+		Ga0059261_3356	0.61	+0.6
3,487,720	+				-0.6
3,487,720	+				-0.1
3,487,720	+				-0.8
3,487,720	+				-0.8
3,487,721	-				+0.6
3,487,721	-				+1.4
3,488,048	+				+0.2
3,488,048	+				+0.3
3,488,048	+				-0.0
3,488,048	+				-0.5
3,488,048	+				-0.2
3,488,048	+				+1.0
3,488,049	-				+0.3
3,488,049	-				-0.4
3,488,049	-				-0.0
3,488,085	+				+0.5
3,488,085	+				-0.3
3,488,086	-				-0.0
3,488,086	-				-0.4
3,488,086	-				+0.6
3,488,176	+				-0.2