Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3279

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,410,789	+		Ga0059261_3277	0.59	-0.5
3,410,789	+		Ga0059261_3277	0.59	+0.1
3,410,789	+		Ga0059261_3277	0.59	-0.1
3,410,789	+		Ga0059261_3277	0.59	+1.0
3,410,790	-		Ga0059261_3277	0.59	+0.2
3,410,813	+		Ga0059261_3277	0.61	-0.3
3,410,813	+		Ga0059261_3277	0.61	+1.0
3,410,942	+		Ga0059261_3277	0.71	-0.9
3,410,942	+		Ga0059261_3277	0.71	+0.5
3,410,942	+		Ga0059261_3277	0.71	+1.3
3,410,943	-		Ga0059261_3277	0.71	-0.2
3,410,943	-		Ga0059261_3277	0.71	-0.5
3,410,984	+		Ga0059261_3277	0.75	-0.2
3,410,985	-		Ga0059261_3277	0.75	+1.2
3,411,070	+		Ga0059261_3277	0.82	-0.4
3,411,070	+		Ga0059261_3277	0.82	-0.7
3,411,071	-		Ga0059261_3277	0.82	+0.5
3,411,118	+		Ga0059261_3277	0.86	+0.1
3,411,118	+		Ga0059261_3277	0.86	-0.2
3,411,118	+		Ga0059261_3277	0.86	+0.0
3,411,119	-		Ga0059261_3277	0.86	+0.1
3,411,119	-		Ga0059261_3277	0.86	-0.7
3,411,119	-		Ga0059261_3277	0.86	+0.3
3,411,119	-		Ga0059261_3277	0.86	+0.2
3,411,119	-		Ga0059261_3277	0.86	-0.0
3,411,188	+				+0.2
3,411,188	+				-0.3
3,411,188	+				+0.4
3,411,188	+				-0.3
3,411,188	+				-0.6
3,411,188	+				+0.0
3,411,189	-				-0.1
3,411,189	-				-0.4
3,411,189	-				-0.3
3,411,215	+				+0.7
3,411,216	-				-0.3
3,411,486	+		Ga0059261_3278	0.45	+0.2
3,411,486	+		Ga0059261_3278	0.45	+0.3
3,411,486	+		Ga0059261_3278	0.45	-1.0
3,411,486	+		Ga0059261_3278	0.45	-0.0
3,411,486	+		Ga0059261_3278	0.45	+0.5
3,411,486	+		Ga0059261_3278	0.45	+0.1
3,411,487	-		Ga0059261_3278	0.45	+0.9
3,411,487	-		Ga0059261_3278	0.45	+0.0
3,411,487	-		Ga0059261_3278	0.45	-0.3
3,411,487	-		Ga0059261_3278	0.45	+1.3
3,411,487	-		Ga0059261_3278	0.45	+0.5
3,411,487	-		Ga0059261_3278	0.45	+0.5
3,411,497	+		Ga0059261_3278	0.48	+0.4
3,411,498	-		Ga0059261_3278	0.48	-0.0
3,411,498	-		Ga0059261_3278	0.48	-0.7
3,411,516	+		Ga0059261_3278	0.52	-0.6
3,411,516	+		Ga0059261_3278	0.52	-0.3
3,411,517	-		Ga0059261_3278	0.52	+0.3
3,411,517	-		Ga0059261_3278	0.52	+0.3
3,411,540	+		Ga0059261_3278	0.58	+0.1
3,411,540	+		Ga0059261_3278	0.58	-0.8
3,411,540	+		Ga0059261_3278	0.58	+0.2
3,411,540	+		Ga0059261_3278	0.58	+0.2
3,411,540	+		Ga0059261_3278	0.58	+0.3
3,411,540	+		Ga0059261_3278	0.58	+0.0
3,411,540	+		Ga0059261_3278	0.58	+0.3
3,411,540	+		Ga0059261_3278	0.58	-0.3
3,411,540	+		Ga0059261_3278	0.58	+0.1
3,411,540	+		Ga0059261_3278	0.58	+0.3
3,411,541	-		Ga0059261_3278	0.58	-0.6
3,411,541	-		Ga0059261_3278	0.58	+0.0
3,411,541	-		Ga0059261_3278	0.58	-0.6
3,411,541	-		Ga0059261_3278	0.58	-0.1
3,411,541	-		Ga0059261_3278	0.58	-1.3
3,411,541	-		Ga0059261_3278	0.58	+0.3
3,411,541	-		Ga0059261_3278	0.58	-0.3
3,411,541	-		Ga0059261_3278	0.58	+0.9
3,411,541	-		Ga0059261_3278	0.58	+0.0
3,411,541	-		Ga0059261_3278	0.58	-0.1
3,411,541	-				+2.6
3,411,541	-		Ga0059261_3278	0.58	-0.2
3,411,541	-		Ga0059261_3278	0.58	-0.3
3,411,541	-		Ga0059261_3278	0.58	+0.4
3,411,541	-		Ga0059261_3278	0.58	-0.4
3,411,541	-		Ga0059261_3278	0.58	+0.3
3,411,541	-		Ga0059261_3278	0.58	+0.6
3,411,541	-		Ga0059261_3278	0.58	-0.6
3,411,541	-		Ga0059261_3278	0.58	+0.6
3,411,541	-		Ga0059261_3278	0.58	+1.1
3,411,541	-		Ga0059261_3278	0.58	+0.4
3,411,541	-		Ga0059261_3278	0.58	+0.5
3,411,541	-		Ga0059261_3278	0.58	+0.2
3,411,650	+		Ga0059261_3278	0.86	-0.3
3,411,650	+		Ga0059261_3278	0.86	+0.3
3,411,651	-		Ga0059261_3278	0.86	-0.3
3,411,651	-		Ga0059261_3278	0.86	+2.1
3,411,651	-		Ga0059261_3278	0.86	+0.0
3,411,651	-		Ga0059261_3278	0.86	-0.9
3,411,651	-		Ga0059261_3278	0.86	-0.3
3,411,705	+				+1.0
3,411,705	+				-0.3
3,411,705	+				-1.3
3,411,706	-				-0.0
3,411,706	-				+0.2
3,411,706	-				-0.6
3,412,152	+		Ga0059261_3279	0.80	-0.1
3,412,152	+		Ga0059261_3279	0.80	+1.8
3,412,152	+		Ga0059261_3279	0.80	+0.3
3,412,153	-		Ga0059261_3279	0.80	-0.5
3,412,153	-		Ga0059261_3279	0.80	+0.8
3,412,153	-		Ga0059261_3279	0.80	+0.7
3,412,153	-		Ga0059261_3279	0.80	-0.4
3,412,153	-		Ga0059261_3279	0.80	+1.0
3,412,153	-		Ga0059261_3279	0.80	-0.1
3,412,153	-		Ga0059261_3279	0.80	-0.3
3,412,196	+		Ga0059261_3279	0.88	+0.3
3,412,196	+		Ga0059261_3279	0.88	+0.6
3,412,196	+		Ga0059261_3279	0.88	+0.0
3,412,197	-		Ga0059261_3279	0.88	-0.6
3,412,197	-		Ga0059261_3279	0.88	+2.0
3,412,197	-		Ga0059261_3279	0.88	+0.6
3,412,261	+				+0.2
3,412,282	+				+0.1
3,412,282	+				-0.3
3,412,282	+				-0.2
3,412,283	-				-0.5
3,412,283	-				+1.0
3,412,283	-				+0.1
3,412,507	+		Ga0059261_3280	0.69	-0.5
3,412,508	-		Ga0059261_3280	0.69	-0.8
3,412,742	+		Ga0059261_3281	0.15	+0.4
3,412,743	-		Ga0059261_3281	0.16	+0.2
3,412,751	+		Ga0059261_3281	0.18	-0.5
3,412,751	+		Ga0059261_3281	0.18	+0.1
3,412,751	+		Ga0059261_3281	0.18	-0.3
3,412,751	+		Ga0059261_3281	0.18	+0.2
3,412,751	+		Ga0059261_3281	0.18	-0.4
3,412,751	+		Ga0059261_3281	0.18	-0.2
3,412,752	-		Ga0059261_3281	0.18	-0.3
3,412,752	-		Ga0059261_3281	0.18	+0.5
3,412,752	-		Ga0059261_3281	0.18	+2.0
3,412,752	-		Ga0059261_3281	0.18	-0.2
3,412,752	-		Ga0059261_3281	0.18	+0.4
3,412,754	+		Ga0059261_3281	0.19	+0.1
3,412,754	+		Ga0059261_3281	0.19	-0.6
3,412,754	+		Ga0059261_3281	0.19	+0.1
3,412,754	+		Ga0059261_3281	0.19	-1.5
3,412,755	-		Ga0059261_3281	0.19	-0.0
3,412,755	-		Ga0059261_3281	0.19	-0.1
3,412,755	-		Ga0059261_3281	0.19	+0.2
3,412,755	-		Ga0059261_3281	0.19	-0.8
3,412,755	-		Ga0059261_3281	0.19	+0.6
3,412,768	-		Ga0059261_3281	0.23	+1.6
3,412,826	+				+1.0
3,412,826	+		Ga0059261_3281	0.39	-0.0
3,412,827	-		Ga0059261_3281	0.39	+0.3
3,412,827	-		Ga0059261_3281	0.39	-0.1
3,412,827	-		Ga0059261_3281	0.39	-0.1
3,412,951	+		Ga0059261_3281	0.73	+0.1
3,412,952	-		Ga0059261_3281	0.74	+0.0
3,412,952	-		Ga0059261_3281	0.74	-0.2
3,412,952	-		Ga0059261_3281	0.74	-0.0
3,412,991	+		Ga0059261_3281	0.84	-0.1
3,412,991	+		Ga0059261_3281	0.84	+0.1
3,413,077	+				-0.3
3,413,077	+				-1.8
3,413,077	+				-1.0
3,413,077	+				+0.2
3,413,078	-				+0.3
3,413,098	+				+0.6
3,413,098	+				-0.1
3,413,098	+				+0.4
3,413,116	+				+1.4
3,413,117	-				-0.4
3,413,138	-				-0.4
3,413,149	+				-1.0
3,413,149	+				-0.1
3,413,149	+				-0.1
3,413,149	+				+0.0
3,413,149	+				+1.2
3,413,150	-				-0.6
3,413,150	-				+0.7
3,413,150	-				+0.3
3,413,150	-				-0.1
3,413,150	-				-0.0
3,413,229	+		Ga0059261_3282	0.13	-0.4
3,413,229	+		Ga0059261_3282	0.13	+0.1
3,413,229	+		Ga0059261_3282	0.13	+0.0
3,413,229	+		Ga0059261_3282	0.13	+0.1
3,413,230	-		Ga0059261_3282	0.13	-0.3
3,413,230	-		Ga0059261_3282	0.13	+0.6
3,413,230	-		Ga0059261_3282	0.13	-0.3