Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3193

Experiment: Vanillin 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 1 mM
3,326,414	+				+0.4
3,326,414	+				-1.7
3,326,414	+				-1.6
3,326,414	+				-0.0
3,326,415	-				-1.0
3,326,415	-				-0.3
3,326,415	-				-0.8
3,326,415	-				+1.6
3,326,415	-				-0.0
3,326,415	-				-0.6
3,326,415	-				-1.2
3,326,415	-				-0.3
3,326,417	+				+0.6
3,326,417	+				-0.4
3,326,417	+				+0.1
3,326,417	+				+2.0
3,326,418	-				+0.2
3,326,418	-				+0.5
3,326,428	+				-0.8
3,326,429	-				-0.2
3,326,429	-				+0.2
3,326,607	+		Ga0059261_3192	0.15	-1.5
3,326,608	-		Ga0059261_3192	0.15	-0.7
3,326,608	-		Ga0059261_3192	0.15	+0.7
3,326,608	-		Ga0059261_3192	0.15	-0.1
3,326,608	-		Ga0059261_3192	0.15	+0.5
3,326,655	+		Ga0059261_3192	0.20	+0.5
3,326,655	+		Ga0059261_3192	0.20	-0.1
3,326,656	-		Ga0059261_3192	0.20	+0.5
3,326,656	-		Ga0059261_3192	0.20	-0.2
3,326,656	-		Ga0059261_3192	0.20	+0.3
3,326,656	-		Ga0059261_3192	0.20	-0.2
3,326,656	-		Ga0059261_3192	0.20	-0.9
3,326,756	-		Ga0059261_3192	0.31	+0.1
3,326,822	+		Ga0059261_3192	0.38	-0.2
3,326,823	-		Ga0059261_3192	0.38	+0.9
3,326,823	-		Ga0059261_3192	0.38	+1.3
3,326,823	-		Ga0059261_3192	0.38	+0.2
3,326,823	-		Ga0059261_3192	0.38	+0.7
3,326,870	+		Ga0059261_3192	0.43	-0.0
3,326,870	+		Ga0059261_3192	0.43	-1.0
3,326,870	+		Ga0059261_3192	0.43	-0.3
3,326,870	+		Ga0059261_3192	0.43	+0.2
3,326,871	-		Ga0059261_3192	0.43	-0.3
3,326,871	-		Ga0059261_3192	0.43	-0.4
3,326,871	-		Ga0059261_3192	0.43	-0.5
3,326,871	-		Ga0059261_3192	0.43	-0.2
3,326,882	+		Ga0059261_3192	0.44	+0.5
3,326,882	+		Ga0059261_3192	0.44	-0.5
3,326,882	+		Ga0059261_3192	0.44	+1.5
3,326,882	+		Ga0059261_3192	0.44	-0.5
3,326,882	+		Ga0059261_3192	0.44	-0.4
3,326,883	-		Ga0059261_3192	0.44	-0.6
3,326,883	-		Ga0059261_3192	0.44	+0.4
3,326,883	-		Ga0059261_3192	0.44	-2.1
3,326,883	-		Ga0059261_3192	0.44	+0.6
3,326,883	-		Ga0059261_3192	0.44	-0.6
3,326,883	-		Ga0059261_3192	0.44	-0.1
3,326,950	+		Ga0059261_3192	0.51	+0.3
3,326,950	+		Ga0059261_3192	0.51	+0.5
3,326,950	+		Ga0059261_3192	0.51	+0.2
3,326,950	+		Ga0059261_3192	0.51	+0.8
3,326,976	+		Ga0059261_3192	0.54	+0.9
3,326,976	+		Ga0059261_3192	0.54	+0.8
3,326,976	+		Ga0059261_3192	0.54	+0.3
3,326,976	+		Ga0059261_3192	0.54	+1.3
3,326,977	-		Ga0059261_3192	0.54	-0.6
3,326,977	-		Ga0059261_3192	0.54	-0.3
3,326,977	-		Ga0059261_3192	0.54	-0.3
3,327,027	+		Ga0059261_3192	0.59	+0.4
3,327,028	-		Ga0059261_3192	0.60	-0.0
3,327,028	-		Ga0059261_3192	0.60	-0.9
3,327,028	-		Ga0059261_3192	0.60	+0.7
3,327,028	-		Ga0059261_3192	0.60	-0.1
3,327,028	-				-0.6
3,327,028	-		Ga0059261_3192	0.60	+0.4
3,327,040	+				+1.0
3,327,040	+		Ga0059261_3192	0.61	-0.2
3,327,130	-		Ga0059261_3192	0.70	+0.5
3,327,166	+		Ga0059261_3192	0.74	-1.2
3,327,167	-		Ga0059261_3192	0.74	+0.4
3,327,167	-		Ga0059261_3192	0.74	-0.9
3,327,288	+		Ga0059261_3192	0.87	+0.1
3,327,289	-		Ga0059261_3192	0.87	-0.0
3,327,289	-		Ga0059261_3192	0.87	+0.6
3,327,410	+				+0.6
3,327,411	-				-1.0
3,327,490	+				-0.2
3,327,490	+				+0.1
3,327,491	-				-0.0
3,327,496	+				+0.6
3,327,496	+				+0.3
3,327,496	+				-0.0
3,327,496	+				-0.4
3,327,496	+				+0.4
3,327,497	-				+0.8
3,327,497	-				-0.1
3,327,526	+				+0.9
3,327,526	+				+0.2
3,327,526	+				+0.1
3,327,526	+				+0.1
3,327,526	+				+0.7
3,327,526	+				-0.3
3,327,527	-				-0.1
3,327,527	-				+1.0
3,327,527	-				+0.3
3,327,527	-				+0.4
3,327,559	+		Ga0059261_3193	0.12	+0.1
3,327,559	+		Ga0059261_3193	0.12	+0.6
3,327,559	+		Ga0059261_3193	0.12	-0.0
3,327,559	+		Ga0059261_3193	0.12	-0.3
3,327,559	+		Ga0059261_3193	0.12	+0.5
3,327,560	-		Ga0059261_3193	0.12	-1.4
3,327,560	-		Ga0059261_3193	0.12	+0.2
3,327,610	+		Ga0059261_3193	0.16	+0.6
3,327,610	+		Ga0059261_3193	0.16	+0.0
3,327,610	+		Ga0059261_3193	0.16	-0.5
3,327,610	+		Ga0059261_3193	0.16	+0.1
3,327,611	-		Ga0059261_3193	0.16	+0.4
3,327,611	-		Ga0059261_3193	0.16	+0.4
3,327,611	-		Ga0059261_3193	0.16	-0.2
3,327,611	-		Ga0059261_3193	0.16	-0.0
3,327,611	-		Ga0059261_3193	0.16	-0.8
3,327,611	-		Ga0059261_3193	0.16	-0.4
3,327,611	-		Ga0059261_3193	0.16	+0.9
3,327,613	+		Ga0059261_3193	0.16	+0.3
3,327,613	+				+1.4
3,327,613	+		Ga0059261_3193	0.16	-0.6
3,327,613	+		Ga0059261_3193	0.16	+0.5
3,327,613	+		Ga0059261_3193	0.16	-0.3
3,327,614	-		Ga0059261_3193	0.16	+1.4
3,327,614	-		Ga0059261_3193	0.16	+1.0
3,327,614	-		Ga0059261_3193	0.16	+0.3
3,327,614	-		Ga0059261_3193	0.16	-0.2
3,327,614	-		Ga0059261_3193	0.16	-0.5
3,327,614	-		Ga0059261_3193	0.16	+0.4
3,327,614	-		Ga0059261_3193	0.16	+1.1
3,327,614	-		Ga0059261_3193	0.16	+1.2
3,327,614	-		Ga0059261_3193	0.16	+0.4
3,327,614	-		Ga0059261_3193	0.16	-0.1
3,327,616	+		Ga0059261_3193	0.16	+0.3
3,327,616	+		Ga0059261_3193	0.16	+1.0
3,327,616	+		Ga0059261_3193	0.16	-0.2
3,327,616	+		Ga0059261_3193	0.16	-0.3
3,327,616	+		Ga0059261_3193	0.16	-0.1
3,327,616	+		Ga0059261_3193	0.16	+1.0
3,327,616	+		Ga0059261_3193	0.16	-0.1
3,327,616	+		Ga0059261_3193	0.16	-0.3
3,327,617	-		Ga0059261_3193	0.16	+0.7
3,327,617	-		Ga0059261_3193	0.16	+0.1
3,327,617	-		Ga0059261_3193	0.16	+0.6
3,327,617	-		Ga0059261_3193	0.16	+0.9
3,327,617	-		Ga0059261_3193	0.16	+0.0
3,327,617	-		Ga0059261_3193	0.16	+0.1
3,327,617	-		Ga0059261_3193	0.16	-0.2
3,327,619	+		Ga0059261_3193	0.17	+1.1
3,327,619	+		Ga0059261_3193	0.17	+0.0
3,327,619	+		Ga0059261_3193	0.17	-0.3
3,327,619	+		Ga0059261_3193	0.17	+0.3
3,327,619	+		Ga0059261_3193	0.17	+0.2
3,327,619	+		Ga0059261_3193	0.17	+0.7
3,327,619	+		Ga0059261_3193	0.17	-0.7
3,327,619	+		Ga0059261_3193	0.17	+1.6
3,327,620	-		Ga0059261_3193	0.17	+0.2
3,327,620	-				-0.0
3,327,620	-		Ga0059261_3193	0.17	+0.4
3,327,620	-		Ga0059261_3193	0.17	+0.3
3,327,620	-		Ga0059261_3193	0.17	-0.8
3,327,620	-		Ga0059261_3193	0.17	+1.0
3,327,620	-		Ga0059261_3193	0.17	+0.6
3,327,620	-		Ga0059261_3193	0.17	+1.0
3,327,622	+		Ga0059261_3193	0.17	+0.3
3,327,622	+		Ga0059261_3193	0.17	+0.4
3,327,622	+		Ga0059261_3193	0.17	-0.0
3,327,622	+		Ga0059261_3193	0.17	-0.3
3,327,622	+		Ga0059261_3193	0.17	+0.7
3,327,622	+		Ga0059261_3193	0.17	+0.5
3,327,622	+		Ga0059261_3193	0.17	-0.0
3,327,622	+		Ga0059261_3193	0.17	-0.1
3,327,622	+		Ga0059261_3193	0.17	+0.1
3,327,623	-		Ga0059261_3193	0.17	-0.4
3,327,623	-		Ga0059261_3193	0.17	-1.2
3,327,623	-		Ga0059261_3193	0.17	+0.2
3,327,623	-		Ga0059261_3193	0.17	-0.9
3,327,748	-		Ga0059261_3193	0.27	+0.3
3,327,748	-		Ga0059261_3193	0.27	-0.4
3,327,817	+				+3.6
3,327,817	+		Ga0059261_3193	0.32	+0.1
3,327,817	+		Ga0059261_3193	0.32	-0.5
3,327,818	-		Ga0059261_3193	0.33	+0.0
3,327,823	+		Ga0059261_3193	0.33	-1.2
3,327,824	-		Ga0059261_3193	0.33	+0.1
3,327,871	+		Ga0059261_3193	0.37	-0.1
3,327,871	+		Ga0059261_3193	0.37	+0.0
3,327,871	+		Ga0059261_3193	0.37	-0.2
3,327,872	-		Ga0059261_3193	0.37	-0.7
3,327,872	-		Ga0059261_3193	0.37	+0.2
3,327,872	-		Ga0059261_3193	0.37	+1.5
3,327,872	-		Ga0059261_3193	0.37	+0.3
3,327,889	-		Ga0059261_3193	0.38	-0.0
3,327,889	-		Ga0059261_3193	0.38	+1.0
3,327,961	+		Ga0059261_3193	0.44	+0.1
3,327,961	+		Ga0059261_3193	0.44	+0.7
3,327,962	-		Ga0059261_3193	0.44	+0.8
3,327,962	-		Ga0059261_3193	0.44	-0.2
3,327,991	+		Ga0059261_3193	0.46	+0.1
3,327,991	+		Ga0059261_3193	0.46	-0.2
3,327,991	+		Ga0059261_3193	0.46	-0.0
3,327,991	+		Ga0059261_3193	0.46	+0.1
3,327,991	+		Ga0059261_3193	0.46	+0.4
3,327,991	+		Ga0059261_3193	0.46	+1.4
3,327,992	-		Ga0059261_3193	0.47	+1.0
3,327,992	-		Ga0059261_3193	0.47	+0.6
3,327,992	-		Ga0059261_3193	0.47	+0.7
3,327,992	-		Ga0059261_3193	0.47	+0.6
3,327,992	-		Ga0059261_3193	0.47	+0.3
3,328,108	+		Ga0059261_3193	0.56	-0.0
3,328,108	+		Ga0059261_3193	0.56	+0.8
3,328,109	-		Ga0059261_3193	0.56	+0.3
3,328,109	-		Ga0059261_3193	0.56	+0.6
3,328,109	-		Ga0059261_3193	0.56	+0.2
3,328,109	-		Ga0059261_3193	0.56	+0.6
3,328,167	+		Ga0059261_3193	0.61	+0.1
3,328,168	-		Ga0059261_3193	0.61	+0.9
3,328,234	-		Ga0059261_3193	0.66	+0.5
3,328,366	+		Ga0059261_3193	0.77	+1.2
3,328,366	+		Ga0059261_3193	0.77	-0.8
3,328,366	+		Ga0059261_3193	0.77	-0.2
3,328,367	-		Ga0059261_3193	0.77	+0.0
3,328,367	-		Ga0059261_3193	0.77	-0.1
3,328,534	+				+1.0
3,328,534	+				+0.4
3,328,534	+				+0.7
3,328,534	+				+0.2
3,328,534	+				+1.3
3,328,534	+				-0.4
3,328,534	+				-0.9
3,328,534	+				+0.7
3,328,535	-				-0.0
3,328,535	-				+0.4
3,328,535	-				-1.3
3,328,535	-				+0.2
3,328,535	-				+0.6
3,328,668	+				-0.6
3,328,669	-				-0.4
3,328,672	+				+0.9
3,328,673	+				+0.9
3,328,673	+				-1.3
3,328,673	+				-1.1
3,328,673	+				-0.7
3,328,673	+				-0.7
3,328,674	-				-0.7
3,328,674	-				-0.2
3,328,674	-				-0.0
3,328,674	-				+0.0
3,328,674	-				-0.0
3,328,674	-				-1.4
3,328,674	-				+0.0
3,328,718	+				-0.1
3,328,718	+				-1.2
3,328,719	-				+0.4
3,328,719	-				-1.0
3,328,726	+				-0.3
3,328,726	+				-1.0
3,328,726	+				+1.4
3,328,727	-				-0.2
3,328,727	-				+0.0
3,328,727	-				+0.2
3,328,822	+				-0.3
3,328,869	-		Ga0059261_3194	0.11	+1.0
3,328,869	-		Ga0059261_3194	0.11	+0.3
3,328,874	+		Ga0059261_3194	0.11	-1.2
3,328,874	+		Ga0059261_3194	0.11	+0.1
3,328,874	+				-0.6
3,328,874	+		Ga0059261_3194	0.11	-0.0
3,328,874	+		Ga0059261_3194	0.11	-0.0
3,328,874	+		Ga0059261_3194	0.11	+1.1
3,328,874	+		Ga0059261_3194	0.11	-0.4
3,328,875	-		Ga0059261_3194	0.11	+0.5
3,328,875	-		Ga0059261_3194	0.11	-0.9
3,328,875	-		Ga0059261_3194	0.11	-0.1
3,328,875	-		Ga0059261_3194	0.11	-2.0
3,328,931	+		Ga0059261_3194	0.16	+0.9
3,328,932	-		Ga0059261_3194	0.16	+0.1
3,328,932	-		Ga0059261_3194	0.16	+1.0
3,328,932	-		Ga0059261_3194	0.16	+0.3
3,328,975	+		Ga0059261_3194	0.20	-0.5
3,329,122	+		Ga0059261_3194	0.32	+0.3
3,329,122	+		Ga0059261_3194	0.32	-0.8
3,329,206	+		Ga0059261_3194	0.39	-0.7
3,329,206	+		Ga0059261_3194	0.39	-0.3
3,329,207	-		Ga0059261_3194	0.39	-0.1
3,329,207	-		Ga0059261_3194	0.39	-0.7
3,329,207	-		Ga0059261_3194	0.39	+0.4
3,329,451	-		Ga0059261_3194	0.59	+0.3
3,329,517	+				-1.3
3,329,518	-		Ga0059261_3194	0.64	+0.2
3,329,518	-		Ga0059261_3194	0.64	-0.1
3,329,518	-		Ga0059261_3194	0.64	-0.5