Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1644

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1643 and Ga0059261_1644 are separated by 98 nucleotidesGa0059261_1644 and Ga0059261_1645 overlap by 4 nucleotides Ga0059261_1643: Ga0059261_1643 - Uncharacterized conserved protein, at 1,729,579 to 1,730,661 _1643 Ga0059261_1644: Ga0059261_1644 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 1,730,760 to 1,731,803 _1644 Ga0059261_1645: Ga0059261_1645 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data), at 1,731,800 to 1,732,960 _1645 Position (kb) 1730 1731 1732Strain fitness (log2 ratio) -2 -1 0 1 2at 1729.873 kb on + strand, within Ga0059261_1643at 1729.873 kb on + strand, within Ga0059261_1643at 1729.873 kb on + strand, within Ga0059261_1643at 1729.874 kb on - strand, within Ga0059261_1643at 1729.874 kb on - strand, within Ga0059261_1643at 1729.942 kb on + strand, within Ga0059261_1643at 1729.942 kb on + strand, within Ga0059261_1643at 1729.943 kb on - strand, within Ga0059261_1643at 1729.943 kb on - strand, within Ga0059261_1643at 1729.943 kb on - strand, within Ga0059261_1643at 1730.085 kb on + strand, within Ga0059261_1643at 1730.085 kb on + strand, within Ga0059261_1643at 1730.085 kb on + strand, within Ga0059261_1643at 1730.085 kb on + strand, within Ga0059261_1643at 1730.085 kb on + strand, within Ga0059261_1643at 1730.085 kb on + strand, within Ga0059261_1643at 1730.086 kb on - strand, within Ga0059261_1643at 1730.086 kb on - strand, within Ga0059261_1643at 1730.086 kb on - strand, within Ga0059261_1643at 1730.086 kb on - strand, within Ga0059261_1643at 1730.130 kb on - strandat 1730.131 kb on + strand, within Ga0059261_1643at 1730.131 kb on + strand, within Ga0059261_1643at 1730.131 kb on + strand, within Ga0059261_1643at 1730.131 kb on + strand, within Ga0059261_1643at 1730.131 kb on + strand, within Ga0059261_1643at 1730.131 kb on + strand, within Ga0059261_1643at 1730.131 kb on + strand, within Ga0059261_1643at 1730.132 kb on - strand, within Ga0059261_1643at 1730.132 kb on - strand, within Ga0059261_1643at 1730.132 kb on - strand, within Ga0059261_1643at 1730.132 kb on - strand, within Ga0059261_1643at 1730.152 kb on + strand, within Ga0059261_1643at 1730.152 kb on + strand, within Ga0059261_1643at 1730.152 kb on + strand, within Ga0059261_1643at 1730.152 kb on + strand, within Ga0059261_1643at 1730.153 kb on - strandat 1730.153 kb on - strand, within Ga0059261_1643at 1730.153 kb on - strand, within Ga0059261_1643at 1730.153 kb on - strand, within Ga0059261_1643at 1730.251 kb on - strand, within Ga0059261_1643at 1730.479 kb on + strand, within Ga0059261_1643at 1730.479 kb on + strand, within Ga0059261_1643at 1730.479 kb on + strand, within Ga0059261_1643at 1730.479 kb on + strand, within Ga0059261_1643at 1730.480 kb on - strand, within Ga0059261_1643at 1730.480 kb on - strand, within Ga0059261_1643at 1730.579 kb on + strandat 1730.579 kb on + strandat 1730.580 kb on - strandat 1730.580 kb on - strandat 1730.596 kb on + strandat 1730.596 kb on + strandat 1730.596 kb on + strandat 1730.596 kb on + strandat 1730.596 kb on + strandat 1730.597 kb on - strandat 1730.597 kb on - strandat 1730.597 kb on - strandat 1730.597 kb on - strandat 1730.597 kb on - strandat 1730.674 kb on + strandat 1730.674 kb on + strandat 1730.674 kb on + strandat 1730.675 kb on - strandat 1730.866 kb on + strand, within Ga0059261_1644at 1730.866 kb on + strand, within Ga0059261_1644at 1730.866 kb on + strand, within Ga0059261_1644at 1730.866 kb on + strand, within Ga0059261_1644at 1730.866 kb on + strand, within Ga0059261_1644at 1730.866 kb on + strand, within Ga0059261_1644at 1730.866 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.867 kb on - strand, within Ga0059261_1644at 1730.952 kb on + strand, within Ga0059261_1644at 1730.952 kb on + strand, within Ga0059261_1644at 1730.953 kb on - strand, within Ga0059261_1644at 1730.953 kb on - strand, within Ga0059261_1644at 1730.953 kb on - strand, within Ga0059261_1644at 1730.953 kb on - strand, within Ga0059261_1644at 1730.953 kb on - strand, within Ga0059261_1644at 1730.953 kb on - strand, within Ga0059261_1644at 1730.961 kb on + strand, within Ga0059261_1644at 1730.961 kb on + strand, within Ga0059261_1644at 1730.961 kb on + strand, within Ga0059261_1644at 1730.961 kb on + strand, within Ga0059261_1644at 1730.962 kb on - strand, within Ga0059261_1644at 1730.962 kb on - strand, within Ga0059261_1644at 1730.962 kb on - strand, within Ga0059261_1644at 1730.962 kb on - strand, within Ga0059261_1644at 1730.962 kb on - strand, within Ga0059261_1644at 1731.025 kb on - strand, within Ga0059261_1644at 1731.025 kb on - strand, within Ga0059261_1644at 1731.240 kb on + strand, within Ga0059261_1644at 1731.240 kb on + strand, within Ga0059261_1644at 1731.240 kb on + strand, within Ga0059261_1644at 1731.240 kb on + strand, within Ga0059261_1644at 1731.240 kb on + strand, within Ga0059261_1644at 1731.241 kb on - strand, within Ga0059261_1644at 1731.241 kb on - strand, within Ga0059261_1644at 1731.241 kb on - strand, within Ga0059261_1644at 1731.241 kb on - strand, within Ga0059261_1644at 1731.241 kb on - strand, within Ga0059261_1644at 1731.242 kb on + strand, within Ga0059261_1644at 1731.242 kb on + strand, within Ga0059261_1644at 1731.243 kb on - strandat 1731.243 kb on - strand, within Ga0059261_1644at 1731.243 kb on - strand, within Ga0059261_1644at 1731.243 kb on - strand, within Ga0059261_1644at 1731.381 kb on - strand, within Ga0059261_1644at 1731.418 kb on - strand, within Ga0059261_1644at 1731.418 kb on - strand, within Ga0059261_1644at 1731.418 kb on - strand, within Ga0059261_1644at 1731.423 kb on + strand, within Ga0059261_1644at 1731.423 kb on + strand, within Ga0059261_1644at 1731.424 kb on - strandat 1731.424 kb on - strand, within Ga0059261_1644at 1731.424 kb on - strand, within Ga0059261_1644at 1731.547 kb on + strand, within Ga0059261_1644at 1731.547 kb on + strand, within Ga0059261_1644at 1731.547 kb on + strand, within Ga0059261_1644at 1731.548 kb on - strand, within Ga0059261_1644at 1731.717 kb on + strandat 1731.799 kb on + strandat 1731.800 kb on - strandat 1731.800 kb on - strandat 1731.800 kb on - strandat 1731.856 kb on + strandat 1731.925 kb on + strand, within Ga0059261_1645at 1731.925 kb on + strand, within Ga0059261_1645at 1731.925 kb on + strand, within Ga0059261_1645at 1731.925 kb on + strand, within Ga0059261_1645at 1731.926 kb on - strand, within Ga0059261_1645at 1731.926 kb on - strand, within Ga0059261_1645at 1731.926 kb on - strand, within Ga0059261_1645at 1731.926 kb on - strand, within Ga0059261_1645at 1731.926 kb on - strand, within Ga0059261_1645at 1731.971 kb on - strand, within Ga0059261_1645at 1731.971 kb on - strand, within Ga0059261_1645at 1731.971 kb on - strand, within Ga0059261_1645at 1732.253 kb on - strand, within Ga0059261_1645at 1732.267 kb on + strand, within Ga0059261_1645at 1732.388 kb on + strand, within Ga0059261_1645at 1732.388 kb on + strand, within Ga0059261_1645at 1732.388 kb on + strand, within Ga0059261_1645at 1732.388 kb on + strand, within Ga0059261_1645at 1732.388 kb on + strand, within Ga0059261_1645at 1732.388 kb on + strand, within Ga0059261_1645at 1732.389 kb on - strand, within Ga0059261_1645at 1732.389 kb on - strand, within Ga0059261_1645at 1732.389 kb on - strand, within Ga0059261_1645at 1732.389 kb on - strand, within Ga0059261_1645at 1732.389 kb on - strand, within Ga0059261_1645at 1732.389 kb on - strand, within Ga0059261_1645at 1732.798 kb on + strand, within Ga0059261_1645at 1732.799 kb on - strand, within Ga0059261_1645at 1732.799 kb on - strand, within Ga0059261_1645

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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1,729,873 + Ga0059261_1643 0.27 +0.5
1,729,873 + Ga0059261_1643 0.27 +0.2
1,729,873 + Ga0059261_1643 0.27 -0.6
1,729,874 - Ga0059261_1643 0.27 -0.7
1,729,874 - Ga0059261_1643 0.27 +0.4
1,729,942 + Ga0059261_1643 0.34 +0.2
1,729,942 + Ga0059261_1643 0.34 -0.3
1,729,943 - Ga0059261_1643 0.34 +1.2
1,729,943 - Ga0059261_1643 0.34 -0.0
1,729,943 - Ga0059261_1643 0.34 -1.4
1,730,085 + Ga0059261_1643 0.47 -0.3
1,730,085 + Ga0059261_1643 0.47 +1.2
1,730,085 + Ga0059261_1643 0.47 -0.5
1,730,085 + Ga0059261_1643 0.47 +0.0
1,730,085 + Ga0059261_1643 0.47 +0.7
1,730,085 + Ga0059261_1643 0.47 +0.3
1,730,086 - Ga0059261_1643 0.47 -0.1
1,730,086 - Ga0059261_1643 0.47 -0.1
1,730,086 - Ga0059261_1643 0.47 +1.4
1,730,086 - Ga0059261_1643 0.47 -0.2
1,730,130 - +1.0
1,730,131 + Ga0059261_1643 0.51 -0.3
1,730,131 + Ga0059261_1643 0.51 +0.5
1,730,131 + Ga0059261_1643 0.51 +0.0
1,730,131 + Ga0059261_1643 0.51 -1.0
1,730,131 + Ga0059261_1643 0.51 +0.4
1,730,131 + Ga0059261_1643 0.51 -0.3
1,730,131 + Ga0059261_1643 0.51 -0.5
1,730,132 - Ga0059261_1643 0.51 -0.0
1,730,132 - Ga0059261_1643 0.51 -0.8
1,730,132 - Ga0059261_1643 0.51 +0.5
1,730,132 - Ga0059261_1643 0.51 +0.0
1,730,152 + Ga0059261_1643 0.53 -0.0
1,730,152 + Ga0059261_1643 0.53 +0.1
1,730,152 + Ga0059261_1643 0.53 -0.8
1,730,152 + Ga0059261_1643 0.53 -0.0
1,730,153 - -1.0
1,730,153 - Ga0059261_1643 0.53 +1.1
1,730,153 - Ga0059261_1643 0.53 +0.2
1,730,153 - Ga0059261_1643 0.53 -0.1
1,730,251 - Ga0059261_1643 0.62 -0.7
1,730,479 + Ga0059261_1643 0.83 +0.2
1,730,479 + Ga0059261_1643 0.83 -0.6
1,730,479 + Ga0059261_1643 0.83 +0.1
1,730,479 + Ga0059261_1643 0.83 +0.7
1,730,480 - Ga0059261_1643 0.83 -0.7
1,730,480 - Ga0059261_1643 0.83 -0.1
1,730,579 + +0.7
1,730,579 + -0.9
1,730,580 - -0.8
1,730,580 - +0.5
1,730,596 + -0.1
1,730,596 + +0.1
1,730,596 + +0.3
1,730,596 + +1.0
1,730,596 + +1.9
1,730,597 - -0.9
1,730,597 - +0.0
1,730,597 - -1.0
1,730,597 - -0.6
1,730,597 - -0.8
1,730,674 + +2.0
1,730,674 + -0.1
1,730,674 + +0.3
1,730,675 - -0.3
1,730,866 + Ga0059261_1644 0.10 +1.3
1,730,866 + Ga0059261_1644 0.10 -1.8
1,730,866 + Ga0059261_1644 0.10 -0.3
1,730,866 + Ga0059261_1644 0.10 -0.4
1,730,866 + Ga0059261_1644 0.10 +0.6
1,730,866 + Ga0059261_1644 0.10 +0.3
1,730,866 - Ga0059261_1644 0.10 +0.8
1,730,867 - Ga0059261_1644 0.10 +0.6
1,730,867 - Ga0059261_1644 0.10 -0.7
1,730,867 - Ga0059261_1644 0.10 +0.4
1,730,867 - Ga0059261_1644 0.10 -0.1
1,730,867 - Ga0059261_1644 0.10 +0.2
1,730,867 - Ga0059261_1644 0.10 +0.2
1,730,867 - Ga0059261_1644 0.10 -0.2
1,730,867 - Ga0059261_1644 0.10 +0.4
1,730,867 - Ga0059261_1644 0.10 -0.8
1,730,867 - Ga0059261_1644 0.10 +0.3
1,730,952 + Ga0059261_1644 0.18 +0.2
1,730,952 + Ga0059261_1644 0.18 -0.4
1,730,953 - Ga0059261_1644 0.18 -0.1
1,730,953 - Ga0059261_1644 0.18 +0.1
1,730,953 - Ga0059261_1644 0.18 -0.0
1,730,953 - Ga0059261_1644 0.18 -0.1
1,730,953 - Ga0059261_1644 0.18 +0.6
1,730,953 - Ga0059261_1644 0.18 +0.0
1,730,961 + Ga0059261_1644 0.19 +0.7
1,730,961 + Ga0059261_1644 0.19 +0.2
1,730,961 + Ga0059261_1644 0.19 -0.4
1,730,961 + Ga0059261_1644 0.19 -0.2
1,730,962 - Ga0059261_1644 0.19 +0.5
1,730,962 - Ga0059261_1644 0.19 -0.1
1,730,962 - Ga0059261_1644 0.19 -0.2
1,730,962 - Ga0059261_1644 0.19 +1.2
1,730,962 - Ga0059261_1644 0.19 +0.5
1,731,025 - Ga0059261_1644 0.25 -0.7
1,731,025 - Ga0059261_1644 0.25 +0.6
1,731,240 + Ga0059261_1644 0.46 -0.5
1,731,240 + Ga0059261_1644 0.46 +0.1
1,731,240 + Ga0059261_1644 0.46 -0.5
1,731,240 + Ga0059261_1644 0.46 +0.2
1,731,240 + Ga0059261_1644 0.46 +0.1
1,731,241 - Ga0059261_1644 0.46 +0.7
1,731,241 - Ga0059261_1644 0.46 +0.0
1,731,241 - Ga0059261_1644 0.46 +0.0
1,731,241 - Ga0059261_1644 0.46 +0.4
1,731,241 - Ga0059261_1644 0.46 -0.2
1,731,242 + Ga0059261_1644 0.46 +0.1
1,731,242 + Ga0059261_1644 0.46 +0.5
1,731,243 - +0.5
1,731,243 - Ga0059261_1644 0.46 +0.1
1,731,243 - Ga0059261_1644 0.46 +0.5
1,731,243 - Ga0059261_1644 0.46 +0.0
1,731,381 - Ga0059261_1644 0.59 +0.0
1,731,418 - Ga0059261_1644 0.63 +0.9
1,731,418 - Ga0059261_1644 0.63 -0.2
1,731,418 - Ga0059261_1644 0.63 +0.2
1,731,423 + Ga0059261_1644 0.64 -1.7
1,731,423 + Ga0059261_1644 0.64 -0.2
1,731,424 - -1.5
1,731,424 - Ga0059261_1644 0.64 +0.4
1,731,424 - Ga0059261_1644 0.64 -0.1
1,731,547 + Ga0059261_1644 0.75 -0.1
1,731,547 + Ga0059261_1644 0.75 -0.1
1,731,547 + Ga0059261_1644 0.75 -1.0
1,731,548 - Ga0059261_1644 0.75 -0.3
1,731,717 + -0.4
1,731,799 + -0.4
1,731,800 - -0.4
1,731,800 - -0.5
1,731,800 - -0.3
1,731,856 + +0.0
1,731,925 + Ga0059261_1645 0.11 +0.5
1,731,925 + Ga0059261_1645 0.11 -0.5
1,731,925 + Ga0059261_1645 0.11 -0.0
1,731,925 + Ga0059261_1645 0.11 -0.1
1,731,926 - Ga0059261_1645 0.11 +0.3
1,731,926 - Ga0059261_1645 0.11 +0.2
1,731,926 - Ga0059261_1645 0.11 -0.1
1,731,926 - Ga0059261_1645 0.11 -0.5
1,731,926 - Ga0059261_1645 0.11 -0.0
1,731,971 - Ga0059261_1645 0.15 +0.9
1,731,971 - Ga0059261_1645 0.15 -0.8
1,731,971 - Ga0059261_1645 0.15 +0.2
1,732,253 - Ga0059261_1645 0.39 -0.5
1,732,267 + Ga0059261_1645 0.40 -0.1
1,732,388 + Ga0059261_1645 0.51 -0.1
1,732,388 + Ga0059261_1645 0.51 -0.2
1,732,388 + Ga0059261_1645 0.51 -1.0
1,732,388 + Ga0059261_1645 0.51 -0.3
1,732,388 + Ga0059261_1645 0.51 -1.3
1,732,388 + Ga0059261_1645 0.51 -2.0
1,732,389 - Ga0059261_1645 0.51 -0.1
1,732,389 - Ga0059261_1645 0.51 -1.3
1,732,389 - Ga0059261_1645 0.51 +0.9
1,732,389 - Ga0059261_1645 0.51 -0.2
1,732,389 - Ga0059261_1645 0.51 -0.5
1,732,389 - Ga0059261_1645 0.51 -0.6
1,732,798 + Ga0059261_1645 0.86 +0.3
1,732,799 - Ga0059261_1645 0.86 +0.0
1,732,799 - Ga0059261_1645 0.86 -0.7

Or see this region's nucleotide sequence