Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1612

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1611 and Ga0059261_1612 overlap by 29 nucleotidesGa0059261_1612 and Ga0059261_1613 are separated by 20 nucleotidesGa0059261_1613 and Ga0059261_1614 are separated by 79 nucleotides Ga0059261_1611: Ga0059261_1611 - Glucose/sorbosone dehydrogenases, at 1,687,431 to 1,688,822 _1611 Ga0059261_1612: Ga0059261_1612 - hypothetical protein, at 1,688,794 to 1,689,222 _1612 Ga0059261_1613: Ga0059261_1613 - Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn), at 1,689,243 to 1,689,545 _1613 Ga0059261_1614: Ga0059261_1614 - apolipoprotein N-acyltransferase, at 1,689,625 to 1,691,181 _1614 Position (kb) 1688 1689 1690Strain fitness (log2 ratio) -1 0 1 2at 1687.953 kb on + strand, within Ga0059261_1611at 1687.953 kb on + strand, within Ga0059261_1611at 1687.953 kb on + strand, within Ga0059261_1611at 1687.954 kb on - strand, within Ga0059261_1611at 1687.954 kb on - strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.100 kb on + strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strandat 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.101 kb on - strand, within Ga0059261_1611at 1688.256 kb on - strand, within Ga0059261_1611at 1688.319 kb on + strand, within Ga0059261_1611at 1688.319 kb on + strand, within Ga0059261_1611at 1688.319 kb on + strand, within Ga0059261_1611at 1688.320 kb on - strand, within Ga0059261_1611at 1688.320 kb on - strand, within Ga0059261_1611at 1688.320 kb on - strandat 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.349 kb on + strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.350 kb on - strand, within Ga0059261_1611at 1688.367 kb on + strand, within Ga0059261_1611at 1688.367 kb on + strand, within Ga0059261_1611at 1688.368 kb on - strand, within Ga0059261_1611at 1688.379 kb on + strand, within Ga0059261_1611at 1688.380 kb on - strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.424 kb on + strand, within Ga0059261_1611at 1688.425 kb on - strand, within Ga0059261_1611at 1688.425 kb on - strand, within Ga0059261_1611at 1688.426 kb on + strand, within Ga0059261_1611at 1688.427 kb on - strand, within Ga0059261_1611at 1688.511 kb on + strand, within Ga0059261_1611at 1688.511 kb on + strand, within Ga0059261_1611at 1688.511 kb on + strand, within Ga0059261_1611at 1688.511 kb on + strand, within Ga0059261_1611at 1688.511 kb on + strand, within Ga0059261_1611at 1688.511 kb on + strand, within Ga0059261_1611at 1688.511 kb on + strand, within Ga0059261_1611at 1688.512 kb on - strand, within Ga0059261_1611at 1688.512 kb on - strand, within Ga0059261_1611at 1688.512 kb on - strand, within Ga0059261_1611at 1688.512 kb on - strand, within Ga0059261_1611at 1688.512 kb on - strand, within Ga0059261_1611at 1688.512 kb on - strandat 1688.512 kb on - strand, within Ga0059261_1611at 1688.583 kb on + strand, within Ga0059261_1611at 1688.583 kb on + strand, within Ga0059261_1611at 1688.584 kb on - strand, within Ga0059261_1611at 1688.584 kb on - strand, within Ga0059261_1611at 1688.796 kb on - strandat 1688.820 kb on + strandat 1688.821 kb on - strandat 1688.952 kb on + strand, within Ga0059261_1612at 1688.953 kb on - strand, within Ga0059261_1612at 1688.953 kb on - strand, within Ga0059261_1612at 1689.563 kb on - strandat 1689.574 kb on - strandat 1689.574 kb on - strandat 1689.574 kb on - strandat 1689.574 kb on - strandat 1689.576 kb on + strandat 1689.577 kb on - strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.591 kb on + strandat 1689.592 kb on - strandat 1689.592 kb on - strandat 1689.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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1,687,953 + Ga0059261_1611 0.38 -0.3
1,687,953 + Ga0059261_1611 0.38 +0.2
1,687,953 + Ga0059261_1611 0.38 -0.5
1,687,954 - Ga0059261_1611 0.38 +0.7
1,687,954 - Ga0059261_1611 0.38 +0.3
1,688,100 + Ga0059261_1611 0.48 +0.8
1,688,100 + Ga0059261_1611 0.48 +0.3
1,688,100 + Ga0059261_1611 0.48 +0.4
1,688,100 + Ga0059261_1611 0.48 -0.4
1,688,100 + Ga0059261_1611 0.48 +0.5
1,688,100 + Ga0059261_1611 0.48 -0.0
1,688,100 + Ga0059261_1611 0.48 -0.5
1,688,100 + Ga0059261_1611 0.48 +1.0
1,688,100 + Ga0059261_1611 0.48 +1.2
1,688,100 + Ga0059261_1611 0.48 +0.0
1,688,100 + Ga0059261_1611 0.48 +0.8
1,688,100 + Ga0059261_1611 0.48 -1.7
1,688,101 - Ga0059261_1611 0.48 -0.3
1,688,101 - -0.5
1,688,101 - Ga0059261_1611 0.48 +0.4
1,688,101 - Ga0059261_1611 0.48 +0.1
1,688,101 - Ga0059261_1611 0.48 +0.3
1,688,101 - Ga0059261_1611 0.48 +0.2
1,688,101 - Ga0059261_1611 0.48 +0.0
1,688,101 - Ga0059261_1611 0.48 +0.2
1,688,101 - Ga0059261_1611 0.48 +0.6
1,688,101 - Ga0059261_1611 0.48 -1.0
1,688,101 - Ga0059261_1611 0.48 -0.5
1,688,101 - Ga0059261_1611 0.48 +0.1
1,688,101 - Ga0059261_1611 0.48 -0.2
1,688,101 - Ga0059261_1611 0.48 +0.4
1,688,256 - Ga0059261_1611 0.59 +0.9
1,688,319 + Ga0059261_1611 0.64 -0.1
1,688,319 + Ga0059261_1611 0.64 +0.1
1,688,319 + Ga0059261_1611 0.64 -1.0
1,688,320 - Ga0059261_1611 0.64 -0.2
1,688,320 - Ga0059261_1611 0.64 +0.0
1,688,320 - +0.0
1,688,349 + Ga0059261_1611 0.66 -0.2
1,688,349 + Ga0059261_1611 0.66 -0.1
1,688,349 + Ga0059261_1611 0.66 +0.2
1,688,349 + Ga0059261_1611 0.66 +0.8
1,688,349 + Ga0059261_1611 0.66 -0.0
1,688,349 + Ga0059261_1611 0.66 +1.4
1,688,349 + Ga0059261_1611 0.66 -0.6
1,688,349 + Ga0059261_1611 0.66 +0.5
1,688,350 - Ga0059261_1611 0.66 +1.6
1,688,350 - Ga0059261_1611 0.66 +1.3
1,688,350 - Ga0059261_1611 0.66 +0.1
1,688,350 - Ga0059261_1611 0.66 +0.6
1,688,367 + Ga0059261_1611 0.67 -0.2
1,688,367 + Ga0059261_1611 0.67 -0.7
1,688,368 - Ga0059261_1611 0.67 +0.5
1,688,379 + Ga0059261_1611 0.68 -0.1
1,688,380 - Ga0059261_1611 0.68 +0.4
1,688,424 + Ga0059261_1611 0.71 -0.4
1,688,424 + Ga0059261_1611 0.71 +0.5
1,688,424 + Ga0059261_1611 0.71 -0.2
1,688,424 + Ga0059261_1611 0.71 +0.5
1,688,424 + Ga0059261_1611 0.71 -0.5
1,688,425 - Ga0059261_1611 0.71 +0.6
1,688,425 - Ga0059261_1611 0.71 +0.0
1,688,426 + Ga0059261_1611 0.71 -0.1
1,688,427 - Ga0059261_1611 0.72 +0.5
1,688,511 + Ga0059261_1611 0.78 +0.2
1,688,511 + Ga0059261_1611 0.78 -0.1
1,688,511 + Ga0059261_1611 0.78 +0.7
1,688,511 + Ga0059261_1611 0.78 -0.1
1,688,511 + Ga0059261_1611 0.78 +0.0
1,688,511 + Ga0059261_1611 0.78 +1.2
1,688,511 + Ga0059261_1611 0.78 -0.4
1,688,512 - Ga0059261_1611 0.78 +0.1
1,688,512 - Ga0059261_1611 0.78 -0.2
1,688,512 - Ga0059261_1611 0.78 -0.7
1,688,512 - Ga0059261_1611 0.78 +0.9
1,688,512 - Ga0059261_1611 0.78 -0.3
1,688,512 - +2.0
1,688,512 - Ga0059261_1611 0.78 +0.6
1,688,583 + Ga0059261_1611 0.83 +0.4
1,688,583 + Ga0059261_1611 0.83 +0.7
1,688,584 - Ga0059261_1611 0.83 +0.6
1,688,584 - Ga0059261_1611 0.83 -0.2
1,688,796 - +0.1
1,688,820 + +0.7
1,688,821 - +0.4
1,688,952 + Ga0059261_1612 0.37 +0.5
1,688,953 - Ga0059261_1612 0.37 +0.6
1,688,953 - Ga0059261_1612 0.37 +0.2
1,689,563 - -1.2
1,689,574 - -0.2
1,689,574 - -1.0
1,689,574 - +0.3
1,689,574 - -0.5
1,689,576 + +0.6
1,689,577 - +0.4
1,689,591 + +0.1
1,689,591 + -0.1
1,689,591 + -0.8
1,689,591 + +0.5
1,689,591 + -1.0
1,689,591 + +0.3
1,689,591 + +0.4
1,689,591 + -0.6
1,689,591 + -0.6
1,689,591 + +0.2
1,689,591 + +0.2
1,689,591 + -0.2
1,689,591 + -0.4
1,689,591 + -0.8
1,689,592 - -1.0
1,689,592 - +0.0
1,689,613 + -0.2

Or see this region's nucleotide sequence