Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1163

Experiment: Vanillin 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1162 and Ga0059261_1163 are separated by 152 nucleotidesGa0059261_1163 and Ga0059261_1164 are separated by 104 nucleotides Ga0059261_1162: Ga0059261_1162 - copper-(or silver)-translocating P-type ATPase, at 1,189,410 to 1,191,944 _1162 Ga0059261_1163: Ga0059261_1163 - Copper chaperone, at 1,192,097 to 1,192,294 _1163 Ga0059261_1164: Ga0059261_1164 - Glycosyl hydrolases family 6, at 1,192,399 to 1,193,628 _1164 Position (kb) 1192 1193Strain fitness (log2 ratio) -2 -1 0 1at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.097 kb on + strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.098 kb on - strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.100 kb on + strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.101 kb on - strand, within Ga0059261_1162at 1191.157 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.470 kb on + strand, within Ga0059261_1162at 1191.471 kb on - strand, within Ga0059261_1162at 1191.471 kb on - strand, within Ga0059261_1162at 1191.471 kb on - strand, within Ga0059261_1162at 1191.499 kb on + strand, within Ga0059261_1162at 1191.499 kb on + strand, within Ga0059261_1162at 1191.704 kb on - strandat 1192.042 kb on + strandat 1192.043 kb on - strandat 1192.043 kb on - strandat 1192.043 kb on - strandat 1192.043 kb on - strandat 1192.199 kb on - strand, within Ga0059261_1163at 1192.199 kb on - strand, within Ga0059261_1163at 1192.274 kb on + strand, within Ga0059261_1163at 1192.274 kb on + strand, within Ga0059261_1163at 1192.274 kb on + strand, within Ga0059261_1163at 1192.275 kb on - strandat 1192.275 kb on - strandat 1192.287 kb on - strandat 1192.360 kb on - strandat 1192.411 kb on + strandat 1192.412 kb on - strandat 1192.412 kb on - strandat 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.577 kb on + strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strand, within Ga0059261_1164at 1192.578 kb on - strandat 1192.578 kb on - strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.769 kb on + strand, within Ga0059261_1164at 1192.770 kb on - strand, within Ga0059261_1164at 1192.770 kb on - strand, within Ga0059261_1164at 1192.823 kb on + strand, within Ga0059261_1164at 1192.824 kb on - strand, within Ga0059261_1164at 1192.824 kb on - strand, within Ga0059261_1164at 1192.824 kb on - strand, within Ga0059261_1164at 1192.875 kb on + strand, within Ga0059261_1164at 1192.875 kb on + strand, within Ga0059261_1164at 1192.875 kb on + strand, within Ga0059261_1164at 1192.876 kb on - strand, within Ga0059261_1164at 1192.876 kb on - strand, within Ga0059261_1164at 1192.876 kb on - strandat 1192.876 kb on - strand, within Ga0059261_1164at 1192.900 kb on - strand, within Ga0059261_1164at 1192.925 kb on + strand, within Ga0059261_1164at 1192.925 kb on + strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strandat 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1192.926 kb on - strand, within Ga0059261_1164at 1193.033 kb on + strandat 1193.033 kb on + strand, within Ga0059261_1164at 1193.034 kb on - strand, within Ga0059261_1164at 1193.034 kb on - strand, within Ga0059261_1164at 1193.258 kb on + strand, within Ga0059261_1164at 1193.258 kb on + strand, within Ga0059261_1164at 1193.258 kb on + strand, within Ga0059261_1164at 1193.258 kb on + strand, within Ga0059261_1164at 1193.259 kb on - strand, within Ga0059261_1164at 1193.259 kb on - strand, within Ga0059261_1164at 1193.259 kb on - strand, within Ga0059261_1164at 1193.291 kb on + strand, within Ga0059261_1164at 1193.292 kb on - strand, within Ga0059261_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1 mM
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1,191,097 + Ga0059261_1162 0.67 -0.4
1,191,097 + Ga0059261_1162 0.67 -0.1
1,191,097 + Ga0059261_1162 0.67 -0.3
1,191,097 + Ga0059261_1162 0.67 +0.5
1,191,097 + Ga0059261_1162 0.67 -0.7
1,191,097 + Ga0059261_1162 0.67 -0.9
1,191,098 - Ga0059261_1162 0.67 -0.1
1,191,098 - Ga0059261_1162 0.67 -0.5
1,191,098 - Ga0059261_1162 0.67 +0.1
1,191,098 - Ga0059261_1162 0.67 -0.1
1,191,098 - Ga0059261_1162 0.67 -0.4
1,191,098 - Ga0059261_1162 0.67 +0.2
1,191,098 - Ga0059261_1162 0.67 -1.2
1,191,098 - Ga0059261_1162 0.67 -0.9
1,191,098 - Ga0059261_1162 0.67 -0.3
1,191,100 + Ga0059261_1162 0.67 -0.4
1,191,100 + Ga0059261_1162 0.67 +1.5
1,191,100 + Ga0059261_1162 0.67 -2.0
1,191,100 + Ga0059261_1162 0.67 -0.3
1,191,100 + Ga0059261_1162 0.67 +0.2
1,191,100 + Ga0059261_1162 0.67 -0.4
1,191,101 - Ga0059261_1162 0.67 -1.4
1,191,101 - Ga0059261_1162 0.67 -0.2
1,191,101 - Ga0059261_1162 0.67 +0.1
1,191,101 - Ga0059261_1162 0.67 +0.0
1,191,101 - Ga0059261_1162 0.67 -1.0
1,191,101 - Ga0059261_1162 0.67 -0.6
1,191,157 + Ga0059261_1162 0.69 +0.5
1,191,470 + Ga0059261_1162 0.81 -0.2
1,191,470 + Ga0059261_1162 0.81 -0.2
1,191,470 + Ga0059261_1162 0.81 +0.7
1,191,470 + Ga0059261_1162 0.81 -0.3
1,191,471 - Ga0059261_1162 0.81 +1.3
1,191,471 - Ga0059261_1162 0.81 -0.9
1,191,471 - Ga0059261_1162 0.81 +0.5
1,191,499 + Ga0059261_1162 0.82 -0.1
1,191,499 + Ga0059261_1162 0.82 +1.7
1,191,704 - +0.3
1,192,042 + +0.5
1,192,043 - -1.5
1,192,043 - +0.5
1,192,043 - +1.0
1,192,043 - +1.0
1,192,199 - Ga0059261_1163 0.52 -0.6
1,192,199 - Ga0059261_1163 0.52 +0.4
1,192,274 + Ga0059261_1163 0.89 +0.5
1,192,274 + Ga0059261_1163 0.89 -0.2
1,192,274 + Ga0059261_1163 0.89 +0.4
1,192,275 - -1.2
1,192,275 - -0.1
1,192,287 - +0.6
1,192,360 - -0.8
1,192,411 + -0.3
1,192,412 - -0.0
1,192,412 - -0.4
1,192,577 + Ga0059261_1164 0.14 -0.3
1,192,577 + Ga0059261_1164 0.14 +1.0
1,192,577 + Ga0059261_1164 0.14 +0.6
1,192,577 + Ga0059261_1164 0.14 +0.2
1,192,577 + Ga0059261_1164 0.14 +1.3
1,192,578 - Ga0059261_1164 0.15 +0.7
1,192,578 - Ga0059261_1164 0.15 -0.0
1,192,578 - Ga0059261_1164 0.15 -0.0
1,192,578 - Ga0059261_1164 0.15 +1.1
1,192,578 - Ga0059261_1164 0.15 -0.2
1,192,578 - Ga0059261_1164 0.15 -0.0
1,192,578 - Ga0059261_1164 0.15 +0.5
1,192,578 - Ga0059261_1164 0.15 -0.6
1,192,578 - Ga0059261_1164 0.15 -0.5
1,192,578 - +1.0
1,192,578 - Ga0059261_1164 0.15 -0.2
1,192,769 + Ga0059261_1164 0.30 +0.2
1,192,769 + Ga0059261_1164 0.30 +0.1
1,192,769 + Ga0059261_1164 0.30 -0.4
1,192,769 + Ga0059261_1164 0.30 -0.3
1,192,770 - Ga0059261_1164 0.30 +0.6
1,192,770 - Ga0059261_1164 0.30 +0.7
1,192,823 + Ga0059261_1164 0.34 -0.3
1,192,824 - Ga0059261_1164 0.35 +0.4
1,192,824 - Ga0059261_1164 0.35 +1.3
1,192,824 - Ga0059261_1164 0.35 +0.4
1,192,875 + Ga0059261_1164 0.39 -0.3
1,192,875 + Ga0059261_1164 0.39 -1.4
1,192,875 + Ga0059261_1164 0.39 +0.4
1,192,876 - Ga0059261_1164 0.39 +0.2
1,192,876 - Ga0059261_1164 0.39 -0.8
1,192,876 - -0.0
1,192,876 - Ga0059261_1164 0.39 -0.2
1,192,900 - Ga0059261_1164 0.41 +1.4
1,192,925 + Ga0059261_1164 0.43 +1.1
1,192,925 + Ga0059261_1164 0.43 -0.3
1,192,926 - Ga0059261_1164 0.43 +0.7
1,192,926 - Ga0059261_1164 0.43 -2.2
1,192,926 - +1.0
1,192,926 - Ga0059261_1164 0.43 -0.4
1,192,926 - Ga0059261_1164 0.43 +1.1
1,192,926 - Ga0059261_1164 0.43 -0.0
1,192,926 - Ga0059261_1164 0.43 +0.4
1,192,926 - Ga0059261_1164 0.43 +0.3
1,193,033 + +1.2
1,193,033 + Ga0059261_1164 0.52 +0.2
1,193,034 - Ga0059261_1164 0.52 +0.7
1,193,034 - Ga0059261_1164 0.52 -0.0
1,193,258 + Ga0059261_1164 0.70 -0.2
1,193,258 + Ga0059261_1164 0.70 -0.9
1,193,258 + Ga0059261_1164 0.70 -0.3
1,193,258 + Ga0059261_1164 0.70 -0.0
1,193,259 - Ga0059261_1164 0.70 -0.5
1,193,259 - Ga0059261_1164 0.70 +0.5
1,193,259 - Ga0059261_1164 0.70 +0.2
1,193,291 + Ga0059261_1164 0.73 +0.7
1,193,292 - Ga0059261_1164 0.73 -0.9

Or see this region's nucleotide sequence