Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29585 and AO356_29590 are separated by 244 nucleotides AO356_29590 and AO356_29595 are separated by 146 nucleotides
AO356_29585: AO356_29585 - alpha/beta hydrolase, at 6,882,467 to 6,883,237
_29585
AO356_29590: AO356_29590 - ester cyclase, at 6,883,482 to 6,883,874
_29590
AO356_29595: AO356_29595 - trehalose synthase, at 6,884,021 to 6,886,087
_29595
Position (kb)
6883
6884 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6882.738 kb on - strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.923 kb on + strand, within AO356_29585 at 6882.923 kb on + strand, within AO356_29585 at 6882.923 kb on + strand, within AO356_29585 at 6882.924 kb on - strand, within AO356_29585 at 6882.924 kb on - strand, within AO356_29585 at 6882.937 kb on + strand, within AO356_29585 at 6883.077 kb on + strand, within AO356_29585 at 6883.077 kb on + strand, within AO356_29585 at 6883.077 kb on + strand, within AO356_29585 at 6883.094 kb on - strand, within AO356_29585 at 6883.236 kb on - strand at 6883.429 kb on + strand at 6883.436 kb on + strand at 6883.506 kb on + strand at 6883.506 kb on + strand at 6883.507 kb on - strand at 6883.508 kb on + strand at 6883.515 kb on + strand at 6883.516 kb on - strand at 6883.791 kb on + strand, within AO356_29590 at 6883.791 kb on + strand, within AO356_29590 at 6883.838 kb on + strand at 6883.843 kb on + strand at 6883.938 kb on + strand at 6883.939 kb on - strand at 6883.971 kb on + strand at 6883.972 kb on - strand at 6883.972 kb on - strand at 6884.039 kb on - strand at 6884.039 kb on - strand at 6884.039 kb on - strand at 6884.104 kb on + strand at 6884.313 kb on + strand, within AO356_29595 at 6884.314 kb on - strand, within AO356_29595 at 6884.463 kb on + strand, within AO356_29595 at 6884.592 kb on + strand, within AO356_29595 at 6884.593 kb on - strand, within AO356_29595 at 6884.593 kb on - strand, within AO356_29595 at 6884.593 kb on - strand, within AO356_29595 at 6884.633 kb on - strand, within AO356_29595 at 6884.644 kb on + strand, within AO356_29595 at 6884.733 kb on + strand, within AO356_29595 at 6884.734 kb on - strand, within AO356_29595 at 6884.763 kb on + strand, within AO356_29595 at 6884.763 kb on + strand, within AO356_29595 at 6884.763 kb on + strand, within AO356_29595 at 6884.764 kb on - strand, within AO356_29595 at 6884.764 kb on - strand, within AO356_29595 at 6884.764 kb on - strand, within AO356_29595 at 6884.821 kb on - strand, within AO356_29595 at 6884.821 kb on - strand, within AO356_29595 at 6884.826 kb on + strand, within AO356_29595 at 6884.827 kb on - strand, within AO356_29595 at 6884.827 kb on - strand, within AO356_29595 at 6884.827 kb on - strand, within AO356_29595 at 6884.827 kb on - strand, within AO356_29595 at 6884.827 kb on - strand, within AO356_29595 at 6884.830 kb on + strand, within AO356_29595 at 6884.830 kb on + strand, within AO356_29595 at 6884.830 kb on + strand, within AO356_29595 at 6884.830 kb on + strand, within AO356_29595 at 6884.831 kb on - strand, within AO356_29595 at 6884.831 kb on - strand, within AO356_29595
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 6,882,738 - AO356_29585 0.35 -1.8 6,882,797 + AO356_29585 0.43 +0.9 6,882,797 + AO356_29585 0.43 -1.7 6,882,797 + AO356_29585 0.43 +0.3 6,882,797 + AO356_29585 0.43 +0.3 6,882,797 + AO356_29585 0.43 -0.2 6,882,797 + AO356_29585 0.43 -0.6 6,882,923 + AO356_29585 0.59 -0.1 6,882,923 + AO356_29585 0.59 -0.6 6,882,923 + AO356_29585 0.59 -0.5 6,882,924 - AO356_29585 0.59 +0.2 6,882,924 - AO356_29585 0.59 -0.2 6,882,937 + AO356_29585 0.61 -0.5 6,883,077 + AO356_29585 0.79 -0.0 6,883,077 + AO356_29585 0.79 +0.2 6,883,077 + AO356_29585 0.79 +0.9 6,883,094 - AO356_29585 0.81 -0.8 6,883,236 - +0.2 6,883,429 + -0.4 6,883,436 + +0.9 6,883,506 + +0.3 6,883,506 + +0.6 6,883,507 - -0.5 6,883,508 + -0.1 6,883,515 + +0.4 6,883,516 - +0.7 6,883,791 + AO356_29590 0.79 +1.1 6,883,791 + AO356_29590 0.79 +0.5 6,883,838 + +1.0 6,883,843 + -0.5 6,883,938 + +0.5 6,883,939 - +0.8 6,883,971 + -1.0 6,883,972 - -0.0 6,883,972 - +1.5 6,884,039 - +0.1 6,884,039 - +0.2 6,884,039 - -0.7 6,884,104 + -0.2 6,884,313 + AO356_29595 0.14 +0.0 6,884,314 - AO356_29595 0.14 +0.6 6,884,463 + AO356_29595 0.21 -0.8 6,884,592 + AO356_29595 0.28 +0.7 6,884,593 - AO356_29595 0.28 +0.1 6,884,593 - AO356_29595 0.28 +1.9 6,884,593 - AO356_29595 0.28 -0.2 6,884,633 - AO356_29595 0.30 +0.5 6,884,644 + AO356_29595 0.30 -1.7 6,884,733 + AO356_29595 0.34 +1.6 6,884,734 - AO356_29595 0.34 +0.8 6,884,763 + AO356_29595 0.36 -0.3 6,884,763 + AO356_29595 0.36 -0.4 6,884,763 + AO356_29595 0.36 -0.3 6,884,764 - AO356_29595 0.36 -0.3 6,884,764 - AO356_29595 0.36 +0.0 6,884,764 - AO356_29595 0.36 +0.2 6,884,821 - AO356_29595 0.39 +0.1 6,884,821 - AO356_29595 0.39 +0.7 6,884,826 + AO356_29595 0.39 -0.1 6,884,827 - AO356_29595 0.39 +0.8 6,884,827 - AO356_29595 0.39 +0.8 6,884,827 - AO356_29595 0.39 -0.3 6,884,827 - AO356_29595 0.39 +0.1 6,884,827 - AO356_29595 0.39 +0.1 6,884,830 + AO356_29595 0.39 -1.1 6,884,830 + AO356_29595 0.39 +0.5 6,884,830 + AO356_29595 0.39 -0.7 6,884,830 + AO356_29595 0.39 -0.0 6,884,831 - AO356_29595 0.39 +0.3 6,884,831 - AO356_29595 0.39 +0.5
Or see this region's nucleotide sequence