Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29035 and AO356_29040 are separated by 54 nucleotides AO356_29040 and AO356_29045 are separated by 342 nucleotides
AO356_29035: AO356_29035 - multidrug transporter CflA, at 6,748,640 to 6,749,860
_29035
AO356_29040: AO356_29040 - alanine racemase, at 6,749,915 to 6,751,189
_29040
AO356_29045: AO356_29045 - hypothetical protein, at 6,751,532 to 6,752,020
_29045
Position (kb)
6749
6750
6751
6752 Strain fitness (log2 ratio)
-2
-1
0
1 at 6749.148 kb on + strand, within AO356_29035 at 6749.222 kb on + strand, within AO356_29035 at 6749.442 kb on - strand, within AO356_29035 at 6749.603 kb on + strand, within AO356_29035 at 6749.604 kb on - strand, within AO356_29035 at 6750.084 kb on + strand, within AO356_29040 at 6750.094 kb on + strand, within AO356_29040 at 6750.095 kb on - strand, within AO356_29040 at 6750.145 kb on - strand, within AO356_29040 at 6750.298 kb on - strand, within AO356_29040 at 6750.362 kb on + strand, within AO356_29040 at 6750.362 kb on + strand, within AO356_29040 at 6750.362 kb on + strand, within AO356_29040 at 6750.363 kb on - strand, within AO356_29040 at 6750.434 kb on + strand, within AO356_29040 at 6750.434 kb on + strand, within AO356_29040 at 6750.434 kb on + strand, within AO356_29040 at 6750.435 kb on - strand, within AO356_29040 at 6750.435 kb on - strand, within AO356_29040 at 6750.435 kb on - strand, within AO356_29040 at 6750.435 kb on - strand, within AO356_29040 at 6750.439 kb on - strand, within AO356_29040 at 6750.456 kb on + strand, within AO356_29040 at 6750.456 kb on + strand, within AO356_29040 at 6750.456 kb on + strand, within AO356_29040 at 6750.456 kb on + strand, within AO356_29040 at 6750.535 kb on - strand, within AO356_29040 at 6750.774 kb on + strand, within AO356_29040 at 6750.774 kb on + strand, within AO356_29040 at 6750.909 kb on + strand, within AO356_29040 at 6750.909 kb on + strand, within AO356_29040 at 6750.909 kb on + strand, within AO356_29040 at 6750.910 kb on - strand, within AO356_29040 at 6751.092 kb on + strand at 6751.092 kb on + strand at 6751.171 kb on + strand at 6751.171 kb on + strand at 6751.172 kb on - strand at 6751.172 kb on - strand at 6751.180 kb on + strand at 6751.181 kb on - strand at 6751.395 kb on + strand at 6751.395 kb on + strand at 6751.396 kb on - strand at 6751.396 kb on - strand at 6751.508 kb on - strand at 6751.985 kb on + strand at 6751.985 kb on + strand at 6752.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 6,749,148 + AO356_29035 0.42 -0.0 6,749,222 + AO356_29035 0.48 -0.1 6,749,442 - AO356_29035 0.66 -1.0 6,749,603 + AO356_29035 0.79 -0.4 6,749,604 - AO356_29035 0.79 +0.5 6,750,084 + AO356_29040 0.13 -0.6 6,750,094 + AO356_29040 0.14 +1.0 6,750,095 - AO356_29040 0.14 -0.6 6,750,145 - AO356_29040 0.18 -0.0 6,750,298 - AO356_29040 0.30 +0.7 6,750,362 + AO356_29040 0.35 -0.4 6,750,362 + AO356_29040 0.35 -0.0 6,750,362 + AO356_29040 0.35 -0.4 6,750,363 - AO356_29040 0.35 +0.2 6,750,434 + AO356_29040 0.41 -0.2 6,750,434 + AO356_29040 0.41 +0.9 6,750,434 + AO356_29040 0.41 -1.9 6,750,435 - AO356_29040 0.41 -0.7 6,750,435 - AO356_29040 0.41 -0.4 6,750,435 - AO356_29040 0.41 +1.1 6,750,435 - AO356_29040 0.41 +0.1 6,750,439 - AO356_29040 0.41 -0.3 6,750,456 + AO356_29040 0.42 +0.4 6,750,456 + AO356_29040 0.42 -0.3 6,750,456 + AO356_29040 0.42 +1.2 6,750,456 + AO356_29040 0.42 -0.1 6,750,535 - AO356_29040 0.49 +0.1 6,750,774 + AO356_29040 0.67 +0.1 6,750,774 + AO356_29040 0.67 +0.5 6,750,909 + AO356_29040 0.78 -0.0 6,750,909 + AO356_29040 0.78 +0.3 6,750,909 + AO356_29040 0.78 +0.4 6,750,910 - AO356_29040 0.78 -1.8 6,751,092 + +0.3 6,751,092 + -1.0 6,751,171 + +0.8 6,751,171 + +0.4 6,751,172 - -0.5 6,751,172 - -0.6 6,751,180 + -0.8 6,751,181 - -1.7 6,751,395 + -2.1 6,751,395 + -0.0 6,751,396 - +1.2 6,751,396 - -0.1 6,751,508 - -0.1 6,751,985 + -0.1 6,751,985 + +0.4 6,752,001 - -2.5
Or see this region's nucleotide sequence