Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24005 and AO356_24010 overlap by 4 nucleotides AO356_24010 and AO356_24015 overlap by 11 nucleotides AO356_24015 and AO356_24020 overlap by 14 nucleotides
AO356_24005: AO356_24005 - aspartate aminotransferase, at 5,382,028 to 5,383,239
_24005
AO356_24010: AO356_24010 - amino acid ABC transporter, at 5,383,236 to 5,383,970
_24010
AO356_24015: AO356_24015 - amino acid ABC transporter, at 5,383,960 to 5,384,748
_24015
AO356_24020: AO356_24020 - phosphate ABC transporter ATP-binding protein, at 5,384,735 to 5,385,571
_24020
Position (kb) 5383
5384 Strain fitness (log2 ratio) -2
-1
0
1 at 5382.571 kb on + strand, within AO356_24005 at 5382.657 kb on + strand, within AO356_24005 at 5382.658 kb on - strand, within AO356_24005 at 5382.658 kb on - strand, within AO356_24005 at 5382.658 kb on - strand, within AO356_24005 at 5382.751 kb on + strand, within AO356_24005 at 5382.751 kb on + strand, within AO356_24005 at 5382.923 kb on - strand, within AO356_24005 at 5383.129 kb on + strand at 5383.130 kb on - strand at 5383.130 kb on - strand at 5383.290 kb on + strand at 5383.311 kb on + strand, within AO356_24010 at 5383.498 kb on - strand, within AO356_24010 at 5383.498 kb on - strand, within AO356_24010 at 5383.821 kb on + strand, within AO356_24010 at 5383.821 kb on + strand, within AO356_24010 at 5383.822 kb on - strand, within AO356_24010 at 5383.929 kb on + strand at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.282 kb on - strand, within AO356_24015 at 5384.289 kb on + strand, within AO356_24015 at 5384.289 kb on + strand, within AO356_24015 at 5384.289 kb on + strand, within AO356_24015 at 5384.290 kb on - strand, within AO356_24015 at 5384.290 kb on - strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.293 kb on + strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.294 kb on - strand, within AO356_24015 at 5384.329 kb on + strand, within AO356_24015 at 5384.329 kb on + strand, within AO356_24015 at 5384.330 kb on - strand, within AO356_24015 at 5384.659 kb on + strand, within AO356_24015 at 5384.659 kb on + strand, within AO356_24015 at 5384.689 kb on + strand at 5384.719 kb on + strand at 5384.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 5,382,571 + AO356_24005 0.45 +0.0 5,382,657 + AO356_24005 0.52 +0.4 5,382,658 - AO356_24005 0.52 +0.8 5,382,658 - AO356_24005 0.52 +0.1 5,382,658 - AO356_24005 0.52 -1.7 5,382,751 + AO356_24005 0.60 -0.9 5,382,751 + AO356_24005 0.60 -0.3 5,382,923 - AO356_24005 0.74 +0.1 5,383,129 + +0.1 5,383,130 - +0.5 5,383,130 - +0.7 5,383,290 + +1.5 5,383,311 + AO356_24010 0.10 +0.1 5,383,498 - AO356_24010 0.36 -0.9 5,383,498 - AO356_24010 0.36 -0.2 5,383,821 + AO356_24010 0.80 +0.0 5,383,821 + AO356_24010 0.80 -0.5 5,383,822 - AO356_24010 0.80 -0.5 5,383,929 + -0.2 5,384,056 + AO356_24015 0.12 +0.1 5,384,056 + AO356_24015 0.12 -0.2 5,384,056 + AO356_24015 0.12 -0.8 5,384,056 + AO356_24015 0.12 +0.7 5,384,057 - AO356_24015 0.12 -0.6 5,384,057 - AO356_24015 0.12 +0.7 5,384,057 - AO356_24015 0.12 +1.0 5,384,282 - AO356_24015 0.41 -0.7 5,384,289 + AO356_24015 0.42 +0.5 5,384,289 + AO356_24015 0.42 -0.8 5,384,289 + AO356_24015 0.42 +1.0 5,384,290 - AO356_24015 0.42 -0.1 5,384,290 - AO356_24015 0.42 +0.4 5,384,293 + AO356_24015 0.42 -2.1 5,384,293 + AO356_24015 0.42 -0.9 5,384,293 + AO356_24015 0.42 -0.4 5,384,293 + AO356_24015 0.42 -0.1 5,384,293 + AO356_24015 0.42 -0.8 5,384,293 + AO356_24015 0.42 +0.2 5,384,293 + AO356_24015 0.42 -0.5 5,384,293 + AO356_24015 0.42 +0.8 5,384,293 + AO356_24015 0.42 -0.6 5,384,294 - AO356_24015 0.42 -0.6 5,384,294 - AO356_24015 0.42 +1.1 5,384,294 - AO356_24015 0.42 -0.2 5,384,294 - AO356_24015 0.42 +1.1 5,384,294 - AO356_24015 0.42 -0.3 5,384,329 + AO356_24015 0.47 -0.9 5,384,329 + AO356_24015 0.47 -0.1 5,384,330 - AO356_24015 0.47 +0.1 5,384,659 + AO356_24015 0.89 -1.5 5,384,659 + AO356_24015 0.89 +0.5 5,384,689 + +0.7 5,384,719 + -0.6 5,384,735 - -1.5
Or see this region's nucleotide sequence