Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21990 and AO356_21995 are separated by 52 nucleotides AO356_21995 and AO356_22000 are separated by 303 nucleotides AO356_22000 and AO356_22005 overlap by 1 nucleotides AO356_22005 and AO356_22010 are separated by 261 nucleotides
AO356_21990: AO356_21990 - LysR family transcriptional regulator, at 4,922,437 to 4,923,315
_21990
AO356_21995: AO356_21995 - hemerythrin, at 4,923,368 to 4,923,844
_21995
AO356_22000: AO356_22000 - plasmid stabilization protein, at 4,924,148 to 4,924,423
_22000
AO356_22005: AO356_22005 - CopG family transcriptional regulator, at 4,924,423 to 4,924,695
_22005
AO356_22010: AO356_22010 - NADH:ubiquinone oxidoreductase subunit N, at 4,924,957 to 4,926,420
_22010
Position (kb) 4924
4925 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4923.153 kb on + strand, within AO356_21990 at 4923.153 kb on + strand, within AO356_21990 at 4923.154 kb on - strand, within AO356_21990 at 4923.154 kb on - strand, within AO356_21990 at 4923.154 kb on - strand, within AO356_21990 at 4923.364 kb on - strand at 4923.405 kb on + strand at 4923.633 kb on + strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.634 kb on - strand, within AO356_21995 at 4923.636 kb on + strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.637 kb on - strand, within AO356_21995 at 4923.686 kb on + strand, within AO356_21995 at 4923.900 kb on + strand at 4923.900 kb on + strand at 4923.984 kb on + strand at 4924.185 kb on + strand, within AO356_22000 at 4924.186 kb on - strand, within AO356_22000 at 4924.199 kb on + strand, within AO356_22000 at 4924.200 kb on - strand, within AO356_22000 at 4924.202 kb on + strand, within AO356_22000 at 4924.202 kb on + strand, within AO356_22000 at 4924.203 kb on - strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.328 kb on + strand, within AO356_22000 at 4924.329 kb on - strand, within AO356_22000 at 4924.329 kb on - strand, within AO356_22000 at 4924.329 kb on - strand, within AO356_22000 at 4924.374 kb on + strand, within AO356_22000 at 4924.375 kb on - strand, within AO356_22000 at 4924.375 kb on - strand, within AO356_22000 at 4924.385 kb on + strand, within AO356_22000 at 4924.386 kb on - strand, within AO356_22000 at 4924.561 kb on + strand, within AO356_22005 at 4924.562 kb on - strand, within AO356_22005 at 4924.573 kb on + strand, within AO356_22005 at 4924.573 kb on + strand, within AO356_22005 at 4924.574 kb on - strand, within AO356_22005 at 4924.574 kb on - strand, within AO356_22005 at 4924.765 kb on - strand at 4924.773 kb on - strand at 4924.788 kb on - strand at 4924.814 kb on + strand at 4924.821 kb on + strand at 4924.821 kb on + strand at 4924.867 kb on + strand at 4924.867 kb on + strand at 4924.867 kb on + strand at 4924.867 kb on + strand at 4924.867 kb on + strand at 4924.867 kb on + strand at 4924.868 kb on - strand at 4924.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,923,153 + AO356_21990 0.81 +0.8 4,923,153 + AO356_21990 0.81 +1.2 4,923,154 - AO356_21990 0.82 -0.3 4,923,154 - AO356_21990 0.82 -0.5 4,923,154 - AO356_21990 0.82 -0.1 4,923,364 - +0.1 4,923,405 + +0.2 4,923,633 + AO356_21995 0.56 +0.0 4,923,634 - AO356_21995 0.56 +0.6 4,923,634 - AO356_21995 0.56 +0.3 4,923,634 - AO356_21995 0.56 +0.4 4,923,634 - AO356_21995 0.56 +1.0 4,923,634 - AO356_21995 0.56 +1.2 4,923,636 + AO356_21995 0.56 +0.2 4,923,637 - AO356_21995 0.56 +0.3 4,923,637 - AO356_21995 0.56 -0.3 4,923,637 - AO356_21995 0.56 +0.9 4,923,637 - AO356_21995 0.56 +0.7 4,923,637 - AO356_21995 0.56 -0.5 4,923,686 + AO356_21995 0.67 -0.3 4,923,900 + +0.2 4,923,900 + -0.4 4,923,984 + +1.3 4,924,185 + AO356_22000 0.13 -0.2 4,924,186 - AO356_22000 0.14 -1.9 4,924,199 + AO356_22000 0.18 +0.5 4,924,200 - AO356_22000 0.19 +0.5 4,924,202 + AO356_22000 0.20 +0.2 4,924,202 + AO356_22000 0.20 +0.4 4,924,203 - AO356_22000 0.20 +1.3 4,924,328 + AO356_22000 0.65 +1.1 4,924,328 + AO356_22000 0.65 -1.3 4,924,328 + AO356_22000 0.65 +0.4 4,924,328 + AO356_22000 0.65 -0.1 4,924,328 + AO356_22000 0.65 +0.0 4,924,328 + AO356_22000 0.65 +1.6 4,924,328 + AO356_22000 0.65 +0.3 4,924,328 + AO356_22000 0.65 +0.1 4,924,329 - AO356_22000 0.66 -0.2 4,924,329 - AO356_22000 0.66 -0.8 4,924,329 - AO356_22000 0.66 +0.9 4,924,374 + AO356_22000 0.82 +0.6 4,924,375 - AO356_22000 0.82 +0.8 4,924,375 - AO356_22000 0.82 +0.3 4,924,385 + AO356_22000 0.86 +0.1 4,924,386 - AO356_22000 0.86 +0.3 4,924,561 + AO356_22005 0.51 +1.2 4,924,562 - AO356_22005 0.51 +0.1 4,924,573 + AO356_22005 0.55 +0.4 4,924,573 + AO356_22005 0.55 +0.1 4,924,574 - AO356_22005 0.55 +0.7 4,924,574 - AO356_22005 0.55 +0.1 4,924,765 - -0.1 4,924,773 - -0.3 4,924,788 - -1.7 4,924,814 + -0.4 4,924,821 + -0.4 4,924,821 + -0.9 4,924,867 + +1.9 4,924,867 + -0.0 4,924,867 + +0.2 4,924,867 + +0.7 4,924,867 + +0.6 4,924,867 + +0.5 4,924,868 - +0.3 4,924,913 - +0.1
Or see this region's nucleotide sequence