Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21905 and AO356_21910 are separated by 35 nucleotides AO356_21910 and AO356_21915 are separated by 36 nucleotides
AO356_21905: AO356_21905 - monooxygenase, at 4,901,091 to 4,902,419
_21905
AO356_21910: AO356_21910 - phosphate ABC transporter substrate-binding protein, at 4,902,455 to 4,903,237
_21910
AO356_21915: AO356_21915 - chemotaxis protein, at 4,903,274 to 4,905,217
_21915
Position (kb)
4902
4903
4904 Strain fitness (log2 ratio)
-2
-1
0
1 at 4901.475 kb on - strand, within AO356_21905 at 4901.841 kb on + strand, within AO356_21905 at 4901.841 kb on + strand, within AO356_21905 at 4901.842 kb on - strand, within AO356_21905 at 4902.015 kb on + strand, within AO356_21905 at 4902.016 kb on - strand, within AO356_21905 at 4902.016 kb on - strand, within AO356_21905 at 4902.016 kb on - strand, within AO356_21905 at 4902.124 kb on - strand, within AO356_21905 at 4902.152 kb on - strand, within AO356_21905 at 4902.180 kb on - strand, within AO356_21905 at 4902.209 kb on + strand, within AO356_21905 at 4902.210 kb on - strand, within AO356_21905 at 4902.234 kb on + strand, within AO356_21905 at 4902.234 kb on + strand, within AO356_21905 at 4902.235 kb on - strand, within AO356_21905 at 4902.235 kb on - strand, within AO356_21905 at 4902.258 kb on + strand, within AO356_21905 at 4902.258 kb on + strand, within AO356_21905 at 4902.259 kb on - strand, within AO356_21905 at 4902.259 kb on - strand, within AO356_21905 at 4902.259 kb on - strand, within AO356_21905 at 4902.354 kb on + strand at 4902.354 kb on + strand at 4902.454 kb on + strand at 4902.468 kb on + strand at 4902.469 kb on - strand at 4902.476 kb on + strand at 4902.476 kb on + strand at 4902.476 kb on + strand at 4902.476 kb on + strand at 4902.498 kb on + strand at 4902.498 kb on + strand at 4902.666 kb on + strand, within AO356_21910 at 4902.680 kb on + strand, within AO356_21910 at 4902.680 kb on + strand, within AO356_21910 at 4902.681 kb on - strand, within AO356_21910 at 4902.681 kb on - strand, within AO356_21910 at 4902.694 kb on + strand, within AO356_21910 at 4902.730 kb on + strand, within AO356_21910 at 4902.730 kb on + strand, within AO356_21910 at 4902.730 kb on + strand, within AO356_21910 at 4902.731 kb on - strand, within AO356_21910 at 4902.731 kb on - strand, within AO356_21910 at 4902.937 kb on + strand, within AO356_21910 at 4902.937 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.953 kb on + strand, within AO356_21910 at 4902.954 kb on - strand, within AO356_21910 at 4902.954 kb on - strand, within AO356_21910 at 4902.954 kb on - strand, within AO356_21910 at 4902.959 kb on + strand, within AO356_21910 at 4902.960 kb on - strand, within AO356_21910 at 4902.960 kb on - strand, within AO356_21910 at 4902.960 kb on - strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.037 kb on + strand, within AO356_21910 at 4903.038 kb on - strand, within AO356_21910 at 4903.038 kb on - strand, within AO356_21910 at 4903.173 kb on - strand at 4903.173 kb on - strand at 4903.173 kb on - strand at 4903.190 kb on + strand at 4903.191 kb on - strand at 4903.191 kb on - strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.227 kb on + strand at 4903.228 kb on - strand at 4903.228 kb on - strand at 4903.276 kb on - strand at 4903.276 kb on - strand at 4903.276 kb on - strand at 4903.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,901,475 - AO356_21905 0.29 +0.0 4,901,841 + AO356_21905 0.56 +0.6 4,901,841 + AO356_21905 0.56 +0.7 4,901,842 - AO356_21905 0.57 +0.4 4,902,015 + AO356_21905 0.70 -0.2 4,902,016 - AO356_21905 0.70 +0.1 4,902,016 - AO356_21905 0.70 +0.3 4,902,016 - AO356_21905 0.70 -0.2 4,902,124 - AO356_21905 0.78 +0.1 4,902,152 - AO356_21905 0.80 -0.2 4,902,180 - AO356_21905 0.82 -0.5 4,902,209 + AO356_21905 0.84 +0.5 4,902,210 - AO356_21905 0.84 -0.2 4,902,234 + AO356_21905 0.86 -0.4 4,902,234 + AO356_21905 0.86 -0.1 4,902,235 - AO356_21905 0.86 +0.2 4,902,235 - AO356_21905 0.86 +0.2 4,902,258 + AO356_21905 0.88 +0.1 4,902,258 + AO356_21905 0.88 +0.6 4,902,259 - AO356_21905 0.88 +0.2 4,902,259 - AO356_21905 0.88 -0.0 4,902,259 - AO356_21905 0.88 +0.3 4,902,354 + -0.4 4,902,354 + -1.1 4,902,454 + -0.0 4,902,468 + +0.4 4,902,469 - +0.1 4,902,476 + -0.1 4,902,476 + -0.3 4,902,476 + -0.7 4,902,476 + -0.3 4,902,498 + -0.1 4,902,498 + -0.1 4,902,666 + AO356_21910 0.27 -0.0 4,902,680 + AO356_21910 0.29 -0.2 4,902,680 + AO356_21910 0.29 -0.0 4,902,681 - AO356_21910 0.29 -0.5 4,902,681 - AO356_21910 0.29 -1.2 4,902,694 + AO356_21910 0.31 +0.5 4,902,730 + AO356_21910 0.35 -0.1 4,902,730 + AO356_21910 0.35 -0.3 4,902,730 + AO356_21910 0.35 +0.3 4,902,731 - AO356_21910 0.35 -0.3 4,902,731 - AO356_21910 0.35 -0.2 4,902,937 + AO356_21910 0.62 +0.5 4,902,937 + AO356_21910 0.62 -0.2 4,902,953 + AO356_21910 0.64 -2.0 4,902,953 + AO356_21910 0.64 -0.6 4,902,953 + AO356_21910 0.64 -0.8 4,902,953 + AO356_21910 0.64 +0.6 4,902,953 + AO356_21910 0.64 -0.3 4,902,953 + AO356_21910 0.64 +0.5 4,902,953 + AO356_21910 0.64 +0.0 4,902,953 + AO356_21910 0.64 -0.4 4,902,954 - AO356_21910 0.64 +0.3 4,902,954 - AO356_21910 0.64 +0.9 4,902,954 - AO356_21910 0.64 +0.4 4,902,959 + AO356_21910 0.64 -0.9 4,902,960 - AO356_21910 0.64 +0.4 4,902,960 - AO356_21910 0.64 +0.7 4,902,960 - AO356_21910 0.64 +0.5 4,903,037 + AO356_21910 0.74 -0.2 4,903,037 + AO356_21910 0.74 +0.1 4,903,037 + AO356_21910 0.74 -0.1 4,903,037 + AO356_21910 0.74 -0.1 4,903,037 + AO356_21910 0.74 -0.7 4,903,037 + AO356_21910 0.74 +0.3 4,903,038 - AO356_21910 0.74 -1.5 4,903,038 - AO356_21910 0.74 -0.4 4,903,173 - +0.5 4,903,173 - -0.6 4,903,173 - -0.6 4,903,190 + +0.2 4,903,191 - -0.3 4,903,191 - +1.1 4,903,227 + -0.4 4,903,227 + -0.2 4,903,227 + +1.2 4,903,227 + -1.0 4,903,227 + -1.1 4,903,228 - +0.2 4,903,228 - +0.1 4,903,276 - -1.1 4,903,276 - -0.5 4,903,276 - -0.1 4,903,319 - -0.3
Or see this region's nucleotide sequence