Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19860 and AO356_19865 are separated by 206 nucleotides AO356_19865 and AO356_19870 are separated by 110 nucleotides
AO356_19860: AO356_19860 - short-chain dehydrogenase, at 4,452,140 to 4,452,901
_19860
AO356_19865: AO356_19865 - GntR family transcriptional regulator, at 4,453,108 to 4,454,496
_19865
AO356_19870: AO356_19870 - chemotaxis protein, at 4,454,607 to 4,456,574
_19870
Position (kb)
4453
4454
4455 Strain fitness (log2 ratio)
-2
-1
0
1 at 4452.277 kb on + strand, within AO356_19860 at 4452.278 kb on - strand, within AO356_19860 at 4452.278 kb on - strand, within AO356_19860 at 4452.383 kb on + strand, within AO356_19860 at 4452.383 kb on + strand, within AO356_19860 at 4452.384 kb on - strand, within AO356_19860 at 4452.384 kb on - strand, within AO356_19860 at 4452.384 kb on - strand, within AO356_19860 at 4452.398 kb on + strand, within AO356_19860 at 4452.398 kb on + strand, within AO356_19860 at 4452.399 kb on - strand, within AO356_19860 at 4452.451 kb on + strand, within AO356_19860 at 4452.515 kb on + strand, within AO356_19860 at 4452.515 kb on + strand, within AO356_19860 at 4452.515 kb on + strand, within AO356_19860 at 4452.516 kb on - strand, within AO356_19860 at 4452.608 kb on + strand, within AO356_19860 at 4452.608 kb on + strand, within AO356_19860 at 4452.608 kb on + strand, within AO356_19860 at 4452.608 kb on + strand, within AO356_19860 at 4452.608 kb on + strand, within AO356_19860 at 4452.608 kb on + strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.609 kb on - strand, within AO356_19860 at 4452.662 kb on + strand, within AO356_19860 at 4452.662 kb on + strand, within AO356_19860 at 4452.663 kb on - strand, within AO356_19860 at 4452.734 kb on + strand, within AO356_19860 at 4452.734 kb on + strand, within AO356_19860 at 4452.734 kb on + strand, within AO356_19860 at 4452.790 kb on + strand, within AO356_19860 at 4452.828 kb on - strand at 4452.828 kb on - strand at 4452.828 kb on - strand at 4452.828 kb on - strand at 4452.828 kb on - strand at 4452.922 kb on - strand at 4452.922 kb on - strand at 4452.922 kb on - strand at 4452.986 kb on + strand at 4452.987 kb on - strand at 4453.036 kb on + strand at 4453.037 kb on - strand at 4453.063 kb on - strand at 4453.091 kb on + strand at 4453.092 kb on - strand at 4453.092 kb on - strand at 4453.531 kb on + strand, within AO356_19865 at 4453.531 kb on + strand, within AO356_19865 at 4453.532 kb on - strand, within AO356_19865 at 4453.952 kb on - strand, within AO356_19865 at 4453.952 kb on - strand, within AO356_19865 at 4453.952 kb on - strand, within AO356_19865 at 4454.011 kb on + strand, within AO356_19865 at 4454.011 kb on + strand, within AO356_19865 at 4454.012 kb on - strand, within AO356_19865 at 4454.079 kb on + strand, within AO356_19865 at 4454.079 kb on + strand, within AO356_19865 at 4454.241 kb on - strand, within AO356_19865 at 4454.241 kb on - strand, within AO356_19865 at 4454.330 kb on + strand, within AO356_19865 at 4454.330 kb on + strand, within AO356_19865 at 4454.331 kb on - strand, within AO356_19865 at 4454.739 kb on + strand at 4454.814 kb on + strand, within AO356_19870 at 4454.814 kb on + strand, within AO356_19870 at 4454.873 kb on - strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.090 kb on + strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.091 kb on - strand, within AO356_19870 at 4455.092 kb on + strand, within AO356_19870 at 4455.092 kb on + strand, within AO356_19870 at 4455.093 kb on - strand, within AO356_19870 at 4455.350 kb on + strand, within AO356_19870 at 4455.351 kb on - strand, within AO356_19870 at 4455.381 kb on + strand, within AO356_19870 at 4455.382 kb on - strand, within AO356_19870 at 4455.414 kb on + strand, within AO356_19870 at 4455.415 kb on - strand, within AO356_19870
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,452,277 + AO356_19860 0.18 +0.3 4,452,278 - AO356_19860 0.18 +0.6 4,452,278 - AO356_19860 0.18 -0.1 4,452,383 + AO356_19860 0.32 -0.1 4,452,383 + AO356_19860 0.32 +0.8 4,452,384 - AO356_19860 0.32 +0.5 4,452,384 - AO356_19860 0.32 -0.9 4,452,384 - AO356_19860 0.32 +0.3 4,452,398 + AO356_19860 0.34 +0.6 4,452,398 + AO356_19860 0.34 +0.9 4,452,399 - AO356_19860 0.34 +0.5 4,452,451 + AO356_19860 0.41 +0.3 4,452,515 + AO356_19860 0.49 +0.2 4,452,515 + AO356_19860 0.49 -0.4 4,452,515 + AO356_19860 0.49 -0.1 4,452,516 - AO356_19860 0.49 +0.3 4,452,608 + AO356_19860 0.61 +0.8 4,452,608 + AO356_19860 0.61 -0.7 4,452,608 + AO356_19860 0.61 +0.9 4,452,608 + AO356_19860 0.61 +0.3 4,452,608 + AO356_19860 0.61 +0.8 4,452,608 + AO356_19860 0.61 -0.1 4,452,609 - AO356_19860 0.62 -0.1 4,452,609 - AO356_19860 0.62 +0.6 4,452,609 - AO356_19860 0.62 +0.5 4,452,609 - AO356_19860 0.62 +0.1 4,452,609 - AO356_19860 0.62 +0.0 4,452,609 - AO356_19860 0.62 -0.1 4,452,609 - AO356_19860 0.62 -0.5 4,452,609 - AO356_19860 0.62 +0.4 4,452,609 - AO356_19860 0.62 -0.3 4,452,609 - AO356_19860 0.62 -0.9 4,452,662 + AO356_19860 0.69 -1.1 4,452,662 + AO356_19860 0.69 +0.7 4,452,663 - AO356_19860 0.69 +1.3 4,452,734 + AO356_19860 0.78 +0.5 4,452,734 + AO356_19860 0.78 -0.3 4,452,734 + AO356_19860 0.78 -0.2 4,452,790 + AO356_19860 0.85 +0.7 4,452,828 - +0.8 4,452,828 - +0.2 4,452,828 - +0.9 4,452,828 - +0.9 4,452,828 - -2.7 4,452,922 - -0.1 4,452,922 - +0.2 4,452,922 - +0.6 4,452,986 + +0.3 4,452,987 - -1.2 4,453,036 + -0.1 4,453,037 - -0.3 4,453,063 - +0.2 4,453,091 + -0.7 4,453,092 - -1.1 4,453,092 - -1.3 4,453,531 + AO356_19865 0.30 -0.0 4,453,531 + AO356_19865 0.30 +0.2 4,453,532 - AO356_19865 0.31 +0.1 4,453,952 - AO356_19865 0.61 -0.1 4,453,952 - AO356_19865 0.61 +0.5 4,453,952 - AO356_19865 0.61 -1.2 4,454,011 + AO356_19865 0.65 +0.5 4,454,011 + AO356_19865 0.65 -0.1 4,454,012 - AO356_19865 0.65 -0.0 4,454,079 + AO356_19865 0.70 -1.2 4,454,079 + AO356_19865 0.70 -0.5 4,454,241 - AO356_19865 0.82 -0.7 4,454,241 - AO356_19865 0.82 -0.4 4,454,330 + AO356_19865 0.88 +0.3 4,454,330 + AO356_19865 0.88 -0.4 4,454,331 - AO356_19865 0.88 -0.6 4,454,739 + -1.1 4,454,814 + AO356_19870 0.11 +0.1 4,454,814 + AO356_19870 0.11 +0.1 4,454,873 - AO356_19870 0.14 +0.8 4,455,090 + AO356_19870 0.25 -0.8 4,455,090 + AO356_19870 0.25 -0.8 4,455,090 + AO356_19870 0.25 +1.0 4,455,090 + AO356_19870 0.25 -0.0 4,455,090 + AO356_19870 0.25 +0.3 4,455,090 + AO356_19870 0.25 +0.1 4,455,090 + AO356_19870 0.25 +0.6 4,455,090 + AO356_19870 0.25 -0.9 4,455,090 + AO356_19870 0.25 +0.1 4,455,090 + AO356_19870 0.25 +0.1 4,455,091 - AO356_19870 0.25 +0.2 4,455,091 - AO356_19870 0.25 +0.9 4,455,091 - AO356_19870 0.25 +1.4 4,455,091 - AO356_19870 0.25 -0.2 4,455,091 - AO356_19870 0.25 +0.3 4,455,091 - AO356_19870 0.25 +0.2 4,455,091 - AO356_19870 0.25 +1.1 4,455,092 + AO356_19870 0.25 +0.6 4,455,092 + AO356_19870 0.25 +0.8 4,455,093 - AO356_19870 0.25 +0.7 4,455,350 + AO356_19870 0.38 +0.6 4,455,351 - AO356_19870 0.38 -0.5 4,455,381 + AO356_19870 0.39 +0.2 4,455,382 - AO356_19870 0.39 +0.7 4,455,414 + AO356_19870 0.41 -0.3 4,455,415 - AO356_19870 0.41 -0.1
Or see this region's nucleotide sequence