Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18960 and AO356_18965 are separated by 105 nucleotides AO356_18965 and AO356_18970 overlap by 4 nucleotides AO356_18970 and AO356_18975 are separated by 143 nucleotides
AO356_18960: AO356_18960 - hypothetical protein, at 4,263,277 to 4,263,876
_18960
AO356_18965: AO356_18965 - transcriptional regulator, at 4,263,982 to 4,264,659
_18965
AO356_18970: AO356_18970 - histidine kinase, at 4,264,656 to 4,266,002
_18970
AO356_18975: AO356_18975 - AraC family transcriptional regulator, at 4,266,146 to 4,267,144
_18975
Position (kb) 4264
4265
4266
4267 Strain fitness (log2 ratio) -1
0
1
2 at 4263.784 kb on - strand, within AO356_18960 at 4263.850 kb on + strand at 4263.850 kb on + strand at 4263.850 kb on + strand at 4263.850 kb on + strand at 4263.851 kb on - strand at 4263.851 kb on - strand at 4263.851 kb on - strand at 4263.851 kb on - strand at 4263.851 kb on - strand at 4263.865 kb on + strand at 4263.865 kb on + strand at 4263.865 kb on + strand at 4263.865 kb on + strand at 4263.865 kb on + strand at 4263.866 kb on - strand at 4263.866 kb on - strand at 4263.866 kb on - strand at 4263.874 kb on + strand at 4263.875 kb on - strand at 4263.894 kb on + strand at 4264.093 kb on + strand, within AO356_18965 at 4264.094 kb on - strand, within AO356_18965 at 4264.273 kb on + strand, within AO356_18965 at 4264.273 kb on + strand, within AO356_18965 at 4264.273 kb on + strand, within AO356_18965 at 4264.274 kb on - strand, within AO356_18965 at 4264.274 kb on - strand, within AO356_18965 at 4264.459 kb on + strand, within AO356_18965 at 4264.460 kb on - strand, within AO356_18965 at 4264.563 kb on - strand, within AO356_18965 at 4264.633 kb on + strand at 4264.903 kb on - strand, within AO356_18970 at 4264.903 kb on - strand, within AO356_18970 at 4264.903 kb on - strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.908 kb on + strand, within AO356_18970 at 4264.909 kb on - strand, within AO356_18970 at 4264.909 kb on - strand, within AO356_18970 at 4264.909 kb on - strand, within AO356_18970 at 4264.909 kb on - strand, within AO356_18970 at 4264.909 kb on - strand, within AO356_18970 at 4264.968 kb on + strand, within AO356_18970 at 4264.968 kb on + strand, within AO356_18970 at 4264.968 kb on + strand, within AO356_18970 at 4264.968 kb on + strand, within AO356_18970 at 4264.968 kb on + strand, within AO356_18970 at 4264.968 kb on + strand, within AO356_18970 at 4264.969 kb on - strand, within AO356_18970 at 4264.980 kb on + strand, within AO356_18970 at 4265.043 kb on + strand, within AO356_18970 at 4265.043 kb on + strand, within AO356_18970 at 4265.044 kb on - strand, within AO356_18970 at 4265.044 kb on - strand, within AO356_18970 at 4265.118 kb on + strand, within AO356_18970 at 4265.154 kb on + strand, within AO356_18970 at 4265.289 kb on - strand, within AO356_18970 at 4265.343 kb on + strand, within AO356_18970 at 4265.344 kb on - strand, within AO356_18970 at 4265.344 kb on - strand, within AO356_18970 at 4265.344 kb on - strand, within AO356_18970 at 4265.505 kb on - strand, within AO356_18970 at 4265.505 kb on - strand, within AO356_18970 at 4265.505 kb on - strand, within AO356_18970 at 4265.505 kb on - strand, within AO356_18970 at 4265.505 kb on - strand, within AO356_18970 at 4265.505 kb on - strand, within AO356_18970 at 4266.165 kb on + strand at 4266.165 kb on + strand at 4266.166 kb on - strand at 4266.166 kb on - strand at 4266.282 kb on + strand, within AO356_18975 at 4266.282 kb on + strand, within AO356_18975 at 4266.282 kb on + strand, within AO356_18975 at 4266.283 kb on - strand, within AO356_18975 at 4266.593 kb on + strand, within AO356_18975 at 4266.594 kb on - strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.614 kb on + strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.615 kb on - strand, within AO356_18975 at 4266.837 kb on + strand, within AO356_18975 at 4266.837 kb on + strand, within AO356_18975 at 4266.838 kb on - strand, within AO356_18975 at 4266.923 kb on - strand, within AO356_18975 at 4266.948 kb on + strand, within AO356_18975 at 4266.949 kb on - strand, within AO356_18975 at 4266.949 kb on - strand, within AO356_18975
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,263,784 - AO356_18960 0.84 +1.4 4,263,850 + +0.8 4,263,850 + +0.0 4,263,850 + -0.8 4,263,850 + -0.3 4,263,851 - +1.2 4,263,851 - +1.3 4,263,851 - +0.4 4,263,851 - +1.2 4,263,851 - +1.6 4,263,865 + -0.1 4,263,865 + -0.2 4,263,865 + -0.5 4,263,865 + +0.3 4,263,865 + +0.9 4,263,866 - +1.6 4,263,866 - +2.1 4,263,866 - +1.4 4,263,874 + -1.1 4,263,875 - +1.1 4,263,894 + +0.0 4,264,093 + AO356_18965 0.16 +0.9 4,264,094 - AO356_18965 0.17 +1.6 4,264,273 + AO356_18965 0.43 +1.1 4,264,273 + AO356_18965 0.43 +1.9 4,264,273 + AO356_18965 0.43 +1.7 4,264,274 - AO356_18965 0.43 +0.6 4,264,274 - AO356_18965 0.43 +1.7 4,264,459 + AO356_18965 0.70 +2.1 4,264,460 - AO356_18965 0.71 +1.2 4,264,563 - AO356_18965 0.86 +1.1 4,264,633 + +0.6 4,264,903 - AO356_18970 0.18 +1.9 4,264,903 - AO356_18970 0.18 +1.5 4,264,903 - AO356_18970 0.18 +1.1 4,264,908 + AO356_18970 0.19 +0.6 4,264,908 + AO356_18970 0.19 +1.2 4,264,908 + AO356_18970 0.19 +1.7 4,264,908 + AO356_18970 0.19 +0.8 4,264,908 + AO356_18970 0.19 +1.7 4,264,908 + AO356_18970 0.19 +1.4 4,264,908 + AO356_18970 0.19 +0.5 4,264,908 + AO356_18970 0.19 +0.9 4,264,909 - AO356_18970 0.19 +1.8 4,264,909 - AO356_18970 0.19 +1.6 4,264,909 - AO356_18970 0.19 +1.2 4,264,909 - AO356_18970 0.19 +2.2 4,264,909 - AO356_18970 0.19 +0.4 4,264,968 + AO356_18970 0.23 +1.8 4,264,968 + AO356_18970 0.23 +0.7 4,264,968 + AO356_18970 0.23 +1.3 4,264,968 + AO356_18970 0.23 +0.8 4,264,968 + AO356_18970 0.23 +0.5 4,264,968 + AO356_18970 0.23 +0.9 4,264,969 - AO356_18970 0.23 +0.5 4,264,980 + AO356_18970 0.24 -0.0 4,265,043 + AO356_18970 0.29 +2.3 4,265,043 + AO356_18970 0.29 +1.5 4,265,044 - AO356_18970 0.29 +1.6 4,265,044 - AO356_18970 0.29 +2.7 4,265,118 + AO356_18970 0.34 +1.7 4,265,154 + AO356_18970 0.37 +0.8 4,265,289 - AO356_18970 0.47 +0.9 4,265,343 + AO356_18970 0.51 +0.5 4,265,344 - AO356_18970 0.51 +1.8 4,265,344 - AO356_18970 0.51 +1.5 4,265,344 - AO356_18970 0.51 +1.3 4,265,505 - AO356_18970 0.63 +1.7 4,265,505 - AO356_18970 0.63 +0.9 4,265,505 - AO356_18970 0.63 +1.9 4,265,505 - AO356_18970 0.63 +2.1 4,265,505 - AO356_18970 0.63 +1.9 4,265,505 - AO356_18970 0.63 +1.6 4,266,165 + +1.1 4,266,165 + +0.5 4,266,166 - +0.6 4,266,166 - +1.0 4,266,282 + AO356_18975 0.14 +0.0 4,266,282 + AO356_18975 0.14 -0.8 4,266,282 + AO356_18975 0.14 +0.4 4,266,283 - AO356_18975 0.14 +0.5 4,266,593 + AO356_18975 0.45 +0.4 4,266,594 - AO356_18975 0.45 -1.1 4,266,614 + AO356_18975 0.47 -0.2 4,266,614 + AO356_18975 0.47 -0.4 4,266,614 + AO356_18975 0.47 -1.3 4,266,614 + AO356_18975 0.47 -0.8 4,266,614 + AO356_18975 0.47 +0.5 4,266,614 + AO356_18975 0.47 +0.0 4,266,614 + AO356_18975 0.47 +0.5 4,266,614 + AO356_18975 0.47 -0.5 4,266,614 + AO356_18975 0.47 +0.3 4,266,614 + AO356_18975 0.47 -0.5 4,266,614 + AO356_18975 0.47 +1.0 4,266,614 + AO356_18975 0.47 -1.6 4,266,614 + AO356_18975 0.47 +0.3 4,266,614 + AO356_18975 0.47 +0.6 4,266,614 + AO356_18975 0.47 +1.1 4,266,615 - AO356_18975 0.47 -0.5 4,266,615 - AO356_18975 0.47 +0.0 4,266,615 - AO356_18975 0.47 +0.8 4,266,615 - AO356_18975 0.47 +0.1 4,266,615 - AO356_18975 0.47 -0.5 4,266,615 - AO356_18975 0.47 -0.4 4,266,615 - AO356_18975 0.47 -0.6 4,266,615 - AO356_18975 0.47 +0.6 4,266,837 + AO356_18975 0.69 +0.1 4,266,837 + AO356_18975 0.69 +0.3 4,266,838 - AO356_18975 0.69 +0.3 4,266,923 - AO356_18975 0.78 +0.9 4,266,948 + AO356_18975 0.80 +1.4 4,266,949 - AO356_18975 0.80 -0.3 4,266,949 - AO356_18975 0.80 -0.3
Or see this region's nucleotide sequence