Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06270

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06265 and AO356_06270 overlap by 4 nucleotidesAO356_06270 and AO356_06275 overlap by 1 nucleotides AO356_06265: AO356_06265 - chemotaxis protein CheR, at 1,388,332 to 1,389,597 _06265 AO356_06270: AO356_06270 - chemotaxis protein CheW, at 1,389,594 to 1,390,130 _06270 AO356_06275: AO356_06275 - chemotaxis protein, at 1,390,130 to 1,391,752 _06275 Position (kb) 1389 1390 1391Strain fitness (log2 ratio) -1 0 1at 1388.963 kb on + strand, within AO356_06265at 1388.964 kb on - strand, within AO356_06265at 1388.964 kb on - strand, within AO356_06265at 1388.996 kb on + strand, within AO356_06265at 1388.997 kb on - strand, within AO356_06265at 1388.997 kb on - strand, within AO356_06265at 1389.052 kb on + strand, within AO356_06265at 1389.052 kb on + strand, within AO356_06265at 1389.053 kb on - strand, within AO356_06265at 1389.053 kb on - strand, within AO356_06265at 1389.053 kb on - strand, within AO356_06265at 1389.263 kb on + strand, within AO356_06265at 1389.461 kb on + strand, within AO356_06265at 1389.462 kb on - strand, within AO356_06265at 1390.482 kb on + strand, within AO356_06275at 1390.482 kb on + strand, within AO356_06275at 1390.482 kb on + strand, within AO356_06275at 1390.483 kb on - strand, within AO356_06275at 1390.483 kb on - strand, within AO356_06275at 1390.483 kb on - strand, within AO356_06275at 1390.552 kb on - strand, within AO356_06275at 1390.552 kb on - strand, within AO356_06275

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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1,388,963 + AO356_06265 0.50 +0.0
1,388,964 - AO356_06265 0.50 -0.5
1,388,964 - AO356_06265 0.50 +0.8
1,388,996 + AO356_06265 0.52 -0.5
1,388,997 - AO356_06265 0.53 -0.6
1,388,997 - AO356_06265 0.53 +0.6
1,389,052 + AO356_06265 0.57 -0.1
1,389,052 + AO356_06265 0.57 +0.3
1,389,053 - AO356_06265 0.57 +0.5
1,389,053 - AO356_06265 0.57 +0.0
1,389,053 - AO356_06265 0.57 -0.3
1,389,263 + AO356_06265 0.74 +1.1
1,389,461 + AO356_06265 0.89 -1.0
1,389,462 - AO356_06265 0.89 +0.2
1,390,482 + AO356_06275 0.22 -0.1
1,390,482 + AO356_06275 0.22 +0.9
1,390,482 + AO356_06275 0.22 +0.9
1,390,483 - AO356_06275 0.22 +1.4
1,390,483 - AO356_06275 0.22 -0.2
1,390,483 - AO356_06275 0.22 -0.7
1,390,552 - AO356_06275 0.26 -0.4
1,390,552 - AO356_06275 0.26 +0.8

Or see this region's nucleotide sequence