Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04200

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04195 and AO356_04200 are separated by 24 nucleotidesAO356_04200 and AO356_04205 are separated by 279 nucleotidesAO356_04205 and AO356_04210 are separated by 234 nucleotides AO356_04195: AO356_04195 - adhesin, at 940,429 to 953,463 _04195 AO356_04200: AO356_04200 - ShlB family hemolysin secretion/activation protein, at 953,488 to 955,194 _04200 AO356_04205: AO356_04205 - hypothetical protein, at 955,474 to 955,749 _04205 AO356_04210: AO356_04210 - RNA helicase, at 955,984 to 957,330 _04210 Position (kb) 953 954 955 956Strain fitness (log2 ratio) -2 -1 0 1at 952.655 kb on + strandat 952.656 kb on - strandat 952.726 kb on - strandat 952.983 kb on + strandat 952.984 kb on - strandat 953.040 kb on - strandat 953.201 kb on + strandat 953.497 kb on + strandat 953.497 kb on + strandat 953.497 kb on + strandat 953.497 kb on + strandat 953.497 kb on + strandat 953.498 kb on - strandat 953.498 kb on - strandat 953.498 kb on - strandat 953.651 kb on + strandat 953.652 kb on - strandat 953.682 kb on - strand, within AO356_04200at 953.804 kb on + strand, within AO356_04200at 953.804 kb on + strand, within AO356_04200at 953.805 kb on - strand, within AO356_04200at 953.805 kb on - strand, within AO356_04200at 953.952 kb on - strand, within AO356_04200at 953.952 kb on - strand, within AO356_04200at 953.952 kb on - strand, within AO356_04200at 954.153 kb on + strand, within AO356_04200at 954.161 kb on + strand, within AO356_04200at 954.162 kb on - strand, within AO356_04200at 954.294 kb on - strand, within AO356_04200at 954.308 kb on + strand, within AO356_04200at 954.308 kb on + strand, within AO356_04200at 954.308 kb on + strand, within AO356_04200at 954.308 kb on + strand, within AO356_04200at 954.309 kb on - strand, within AO356_04200at 954.309 kb on - strand, within AO356_04200at 954.309 kb on - strand, within AO356_04200at 954.314 kb on + strand, within AO356_04200at 954.314 kb on + strand, within AO356_04200at 954.314 kb on + strand, within AO356_04200at 954.315 kb on - strand, within AO356_04200at 954.315 kb on - strand, within AO356_04200at 954.347 kb on + strand, within AO356_04200at 954.347 kb on + strand, within AO356_04200at 954.347 kb on + strand, within AO356_04200at 954.348 kb on - strand, within AO356_04200at 954.348 kb on - strand, within AO356_04200at 954.351 kb on - strand, within AO356_04200at 954.550 kb on + strand, within AO356_04200at 954.550 kb on + strand, within AO356_04200at 954.550 kb on + strand, within AO356_04200at 954.550 kb on + strand, within AO356_04200at 954.550 kb on + strand, within AO356_04200at 954.551 kb on - strand, within AO356_04200at 954.551 kb on - strand, within AO356_04200at 954.551 kb on - strand, within AO356_04200at 954.551 kb on - strand, within AO356_04200at 954.707 kb on - strand, within AO356_04200at 954.800 kb on + strand, within AO356_04200at 954.800 kb on + strand, within AO356_04200at 954.800 kb on + strand, within AO356_04200at 954.801 kb on - strand, within AO356_04200at 954.801 kb on - strand, within AO356_04200at 954.833 kb on + strand, within AO356_04200at 954.833 kb on + strand, within AO356_04200at 954.833 kb on + strand, within AO356_04200at 954.834 kb on - strand, within AO356_04200at 954.834 kb on - strand, within AO356_04200at 954.834 kb on - strand, within AO356_04200at 954.834 kb on - strand, within AO356_04200at 954.834 kb on - strand, within AO356_04200at 954.834 kb on - strand, within AO356_04200at 954.896 kb on + strand, within AO356_04200at 954.896 kb on + strand, within AO356_04200at 954.897 kb on - strand, within AO356_04200at 954.897 kb on - strand, within AO356_04200at 954.897 kb on - strand, within AO356_04200at 955.268 kb on + strandat 955.269 kb on - strandat 955.269 kb on - strandat 955.289 kb on + strandat 955.289 kb on + strandat 955.290 kb on - strandat 955.290 kb on - strandat 955.290 kb on - strandat 955.292 kb on + strandat 955.292 kb on + strandat 955.292 kb on + strandat 955.292 kb on + strandat 955.293 kb on - strandat 955.293 kb on - strandat 955.369 kb on + strandat 955.402 kb on - strandat 955.442 kb on - strandat 955.459 kb on + strandat 955.459 kb on + strandat 955.460 kb on - strandat 955.460 kb on - strandat 955.460 kb on - strandat 955.686 kb on + strand, within AO356_04205at 955.686 kb on + strand, within AO356_04205at 955.686 kb on + strand, within AO356_04205at 955.789 kb on + strandat 955.789 kb on + strandat 955.790 kb on - strandat 955.790 kb on - strandat 955.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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952,655 + +0.2
952,656 - -0.1
952,726 - -0.3
952,983 + +0.4
952,984 - +0.2
953,040 - +0.9
953,201 + +0.7
953,497 + -0.4
953,497 + -0.6
953,497 + +1.0
953,497 + +1.4
953,497 + +0.7
953,498 - +0.2
953,498 - -0.4
953,498 - -1.4
953,651 + +0.4
953,652 - -1.8
953,682 - AO356_04200 0.11 -2.3
953,804 + AO356_04200 0.19 +0.0
953,804 + AO356_04200 0.19 +0.6
953,805 - AO356_04200 0.19 +0.3
953,805 - AO356_04200 0.19 -0.3
953,952 - AO356_04200 0.27 -0.6
953,952 - AO356_04200 0.27 -0.1
953,952 - AO356_04200 0.27 -0.1
954,153 + AO356_04200 0.39 -0.2
954,161 + AO356_04200 0.39 +0.4
954,162 - AO356_04200 0.39 +0.7
954,294 - AO356_04200 0.47 -0.7
954,308 + AO356_04200 0.48 -0.4
954,308 + AO356_04200 0.48 +0.9
954,308 + AO356_04200 0.48 +0.7
954,308 + AO356_04200 0.48 +0.1
954,309 - AO356_04200 0.48 +0.6
954,309 - AO356_04200 0.48 -0.3
954,309 - AO356_04200 0.48 -0.7
954,314 + AO356_04200 0.48 -1.0
954,314 + AO356_04200 0.48 -0.6
954,314 + AO356_04200 0.48 +0.8
954,315 - AO356_04200 0.48 +1.7
954,315 - AO356_04200 0.48 -2.2
954,347 + AO356_04200 0.50 +0.2
954,347 + AO356_04200 0.50 +0.8
954,347 + AO356_04200 0.50 -0.4
954,348 - AO356_04200 0.50 -0.8
954,348 - AO356_04200 0.50 +0.7
954,351 - AO356_04200 0.51 +0.3
954,550 + AO356_04200 0.62 -0.2
954,550 + AO356_04200 0.62 -0.2
954,550 + AO356_04200 0.62 +0.0
954,550 + AO356_04200 0.62 +0.3
954,550 + AO356_04200 0.62 -0.6
954,551 - AO356_04200 0.62 +0.0
954,551 - AO356_04200 0.62 +0.4
954,551 - AO356_04200 0.62 +0.2
954,551 - AO356_04200 0.62 +0.1
954,707 - AO356_04200 0.71 -0.2
954,800 + AO356_04200 0.77 -0.0
954,800 + AO356_04200 0.77 +0.2
954,800 + AO356_04200 0.77 -0.7
954,801 - AO356_04200 0.77 +0.0
954,801 - AO356_04200 0.77 -0.6
954,833 + AO356_04200 0.79 +0.5
954,833 + AO356_04200 0.79 -0.5
954,833 + AO356_04200 0.79 +0.1
954,834 - AO356_04200 0.79 -0.9
954,834 - AO356_04200 0.79 -1.9
954,834 - AO356_04200 0.79 -1.2
954,834 - AO356_04200 0.79 -0.7
954,834 - AO356_04200 0.79 -1.9
954,834 - AO356_04200 0.79 -0.1
954,896 + AO356_04200 0.82 +1.2
954,896 + AO356_04200 0.82 +0.9
954,897 - AO356_04200 0.83 -0.2
954,897 - AO356_04200 0.83 +0.1
954,897 - AO356_04200 0.83 -0.6
955,268 + +0.6
955,269 - -0.2
955,269 - -0.9
955,289 + +0.0
955,289 + +1.3
955,290 - -2.2
955,290 - +0.5
955,290 - -0.1
955,292 + +0.7
955,292 + +1.7
955,292 + -1.6
955,292 + -1.5
955,293 - -2.2
955,293 - -0.5
955,369 + +0.6
955,402 - -1.5
955,442 - -0.2
955,459 + +1.2
955,459 + +0.1
955,460 - -0.5
955,460 - -0.5
955,460 - -0.4
955,686 + AO356_04205 0.77 +1.5
955,686 + AO356_04205 0.77 +0.0
955,686 + AO356_04205 0.77 -0.0
955,789 + +0.0
955,789 + +0.7
955,790 - -1.3
955,790 - +0.4
955,790 - +0.1

Or see this region's nucleotide sequence