Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03965

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03955 and AO356_03960 overlap by 8 nucleotidesAO356_03960 and AO356_03965 overlap by 4 nucleotidesAO356_03965 and AO356_03970 are separated by 179 nucleotides AO356_03955: AO356_03955 - hypothetical protein, at 881,132 to 882,112 _03955 AO356_03960: AO356_03960 - hypothetical protein, at 882,105 to 882,863 _03960 AO356_03965: AO356_03965 - aminotransferase, at 882,860 to 883,978 _03965 AO356_03970: AO356_03970 - AAA family ATPase, at 884,158 to 885,717 _03970 Position (kb) 882 883 884Strain fitness (log2 ratio) -2 -1 0 1at 881.907 kb on + strand, within AO356_03955at 881.908 kb on - strand, within AO356_03955at 881.964 kb on + strand, within AO356_03955at 881.965 kb on - strand, within AO356_03955at 881.965 kb on - strand, within AO356_03955at 881.965 kb on - strand, within AO356_03955at 881.965 kb on - strand, within AO356_03955at 881.965 kb on - strand, within AO356_03955at 882.002 kb on + strand, within AO356_03955at 882.061 kb on + strandat 882.061 kb on + strandat 882.061 kb on + strandat 882.061 kb on + strandat 882.061 kb on + strandat 882.061 kb on + strandat 882.061 kb on + strandat 882.062 kb on - strandat 882.062 kb on - strandat 882.062 kb on - strandat 882.062 kb on - strandat 882.070 kb on + strandat 882.070 kb on + strandat 882.071 kb on - strandat 882.163 kb on + strandat 882.163 kb on + strandat 882.163 kb on + strandat 882.163 kb on + strandat 882.163 kb on + strandat 882.164 kb on - strandat 882.164 kb on - strandat 882.164 kb on - strandat 882.260 kb on + strand, within AO356_03960at 882.263 kb on + strand, within AO356_03960at 882.263 kb on + strand, within AO356_03960at 882.263 kb on + strand, within AO356_03960at 882.264 kb on - strand, within AO356_03960at 882.264 kb on - strand, within AO356_03960at 882.264 kb on - strand, within AO356_03960at 882.264 kb on - strand, within AO356_03960at 882.264 kb on - strand, within AO356_03960at 882.280 kb on - strand, within AO356_03960at 882.293 kb on - strand, within AO356_03960at 882.323 kb on - strand, within AO356_03960at 882.323 kb on - strand, within AO356_03960at 882.429 kb on + strand, within AO356_03960at 882.429 kb on + strand, within AO356_03960at 882.430 kb on - strand, within AO356_03960at 882.599 kb on + strand, within AO356_03960at 882.600 kb on - strand, within AO356_03960at 882.600 kb on - strand, within AO356_03960at 882.727 kb on + strand, within AO356_03960at 882.727 kb on + strand, within AO356_03960at 882.727 kb on + strand, within AO356_03960at 882.727 kb on + strand, within AO356_03960at 882.727 kb on + strand, within AO356_03960at 882.728 kb on - strand, within AO356_03960at 882.766 kb on + strand, within AO356_03960at 882.766 kb on + strand, within AO356_03960at 882.766 kb on + strand, within AO356_03960at 882.775 kb on + strand, within AO356_03960at 882.775 kb on + strand, within AO356_03960at 882.776 kb on - strand, within AO356_03960at 882.776 kb on - strand, within AO356_03960at 882.776 kb on - strand, within AO356_03960at 882.787 kb on + strand, within AO356_03960at 882.787 kb on + strand, within AO356_03960at 882.787 kb on + strand, within AO356_03960at 882.788 kb on - strandat 882.788 kb on - strandat 882.788 kb on - strandat 882.788 kb on - strandat 882.848 kb on + strandat 882.849 kb on - strandat 882.885 kb on - strandat 882.928 kb on - strandat 882.944 kb on + strandat 882.944 kb on + strandat 882.945 kb on - strandat 882.963 kb on + strandat 882.963 kb on + strandat 882.963 kb on + strandat 882.963 kb on + strandat 882.964 kb on - strandat 882.964 kb on - strandat 882.964 kb on - strandat 882.964 kb on - strandat 882.964 kb on - strandat 882.964 kb on - strandat 883.008 kb on + strand, within AO356_03965at 883.026 kb on - strand, within AO356_03965at 883.041 kb on + strand, within AO356_03965at 883.041 kb on + strand, within AO356_03965at 883.081 kb on - strand, within AO356_03965at 883.081 kb on - strand, within AO356_03965at 883.081 kb on - strand, within AO356_03965at 883.134 kb on + strand, within AO356_03965at 883.134 kb on + strand, within AO356_03965at 883.135 kb on - strand, within AO356_03965at 883.212 kb on + strand, within AO356_03965at 883.212 kb on + strand, within AO356_03965at 883.213 kb on - strand, within AO356_03965at 883.254 kb on + strand, within AO356_03965at 883.254 kb on + strand, within AO356_03965at 883.254 kb on + strand, within AO356_03965at 883.255 kb on - strand, within AO356_03965at 883.259 kb on + strand, within AO356_03965at 883.260 kb on - strand, within AO356_03965at 883.260 kb on - strand, within AO356_03965at 883.260 kb on - strand, within AO356_03965at 883.260 kb on - strand, within AO356_03965at 883.359 kb on + strand, within AO356_03965at 883.360 kb on - strand, within AO356_03965at 883.360 kb on - strand, within AO356_03965at 883.417 kb on + strand, within AO356_03965at 883.417 kb on + strand, within AO356_03965at 883.417 kb on + strand, within AO356_03965at 883.417 kb on + strand, within AO356_03965at 883.417 kb on + strand, within AO356_03965at 883.418 kb on - strand, within AO356_03965at 883.418 kb on - strand, within AO356_03965at 883.518 kb on + strand, within AO356_03965at 883.518 kb on + strand, within AO356_03965at 883.518 kb on + strand, within AO356_03965at 883.518 kb on + strand, within AO356_03965at 883.518 kb on + strand, within AO356_03965at 883.519 kb on - strand, within AO356_03965at 883.519 kb on - strand, within AO356_03965at 883.519 kb on - strand, within AO356_03965at 883.522 kb on + strand, within AO356_03965at 883.522 kb on + strand, within AO356_03965at 883.523 kb on - strand, within AO356_03965at 883.523 kb on - strand, within AO356_03965at 883.523 kb on - strand, within AO356_03965at 883.536 kb on + strand, within AO356_03965at 883.537 kb on - strand, within AO356_03965at 883.584 kb on + strand, within AO356_03965at 883.585 kb on - strand, within AO356_03965at 883.734 kb on + strand, within AO356_03965at 883.837 kb on - strand, within AO356_03965at 883.837 kb on - strand, within AO356_03965at 883.894 kb on + strandat 883.894 kb on + strandat 883.894 kb on + strandat 883.894 kb on + strandat 883.917 kb on + strandat 883.917 kb on + strandat 883.917 kb on + strandat 883.943 kb on + strandat 883.943 kb on + strandat 883.944 kb on - strandat 883.982 kb on + strandat 883.982 kb on + strandat 883.982 kb on + strandat 883.982 kb on + strandat 883.983 kb on - strandat 883.983 kb on - strandat 883.987 kb on + strandat 884.054 kb on - strandat 884.054 kb on - strandat 884.054 kb on - strandat 884.160 kb on - strandat 884.183 kb on + strandat 884.183 kb on + strandat 884.183 kb on + strandat 884.184 kb on - strandat 884.184 kb on - strandat 884.184 kb on - strandat 884.184 kb on - strandat 884.184 kb on - strandat 884.184 kb on - strandat 884.196 kb on + strandat 884.196 kb on + strandat 884.264 kb on + strandat 884.264 kb on + strandat 884.265 kb on - strandat 884.373 kb on + strand, within AO356_03970at 884.462 kb on + strand, within AO356_03970at 884.463 kb on - strand, within AO356_03970at 884.621 kb on + strand, within AO356_03970at 884.621 kb on + strand, within AO356_03970at 884.621 kb on + strand, within AO356_03970at 884.621 kb on + strand, within AO356_03970at 884.702 kb on + strand, within AO356_03970at 884.702 kb on + strand, within AO356_03970at 884.702 kb on + strand, within AO356_03970at 884.702 kb on + strand, within AO356_03970at 884.702 kb on + strand, within AO356_03970at 884.703 kb on - strand, within AO356_03970at 884.703 kb on - strand, within AO356_03970at 884.703 kb on - strand, within AO356_03970at 884.703 kb on - strand, within AO356_03970at 884.703 kb on - strand, within AO356_03970at 884.703 kb on - strand, within AO356_03970

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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881,907 + AO356_03955 0.79 -0.1
881,908 - AO356_03955 0.79 +0.2
881,964 + AO356_03955 0.85 -0.8
881,965 - AO356_03955 0.85 -0.4
881,965 - AO356_03955 0.85 +0.1
881,965 - AO356_03955 0.85 +0.0
881,965 - AO356_03955 0.85 +0.5
881,965 - AO356_03955 0.85 -0.3
882,002 + AO356_03955 0.89 -0.0
882,061 + +0.5
882,061 + -1.2
882,061 + +0.3
882,061 + -0.2
882,061 + +0.5
882,061 + -0.3
882,061 + -0.6
882,062 - +0.9
882,062 - -0.1
882,062 - +0.5
882,062 - +0.4
882,070 + +0.9
882,070 + +0.3
882,071 - +0.2
882,163 + +1.1
882,163 + +0.6
882,163 + +1.3
882,163 + -0.3
882,163 + +0.8
882,164 - +0.3
882,164 - -0.1
882,164 - +0.3
882,260 + AO356_03960 0.20 +0.2
882,263 + AO356_03960 0.21 +0.8
882,263 + AO356_03960 0.21 -0.1
882,263 + AO356_03960 0.21 -0.5
882,264 - AO356_03960 0.21 +1.0
882,264 - AO356_03960 0.21 -0.2
882,264 - AO356_03960 0.21 +0.6
882,264 - AO356_03960 0.21 +0.6
882,264 - AO356_03960 0.21 -0.2
882,280 - AO356_03960 0.23 -0.4
882,293 - AO356_03960 0.25 +0.5
882,323 - AO356_03960 0.29 +0.3
882,323 - AO356_03960 0.29 +0.7
882,429 + AO356_03960 0.43 -0.1
882,429 + AO356_03960 0.43 +0.5
882,430 - AO356_03960 0.43 -0.6
882,599 + AO356_03960 0.65 -0.6
882,600 - AO356_03960 0.65 -0.0
882,600 - AO356_03960 0.65 -0.4
882,727 + AO356_03960 0.82 -0.5
882,727 + AO356_03960 0.82 -0.4
882,727 + AO356_03960 0.82 +0.5
882,727 + AO356_03960 0.82 +1.2
882,727 + AO356_03960 0.82 +0.7
882,728 - AO356_03960 0.82 +0.3
882,766 + AO356_03960 0.87 +0.1
882,766 + AO356_03960 0.87 +0.2
882,766 + AO356_03960 0.87 -0.9
882,775 + AO356_03960 0.88 +1.6
882,775 + AO356_03960 0.88 -0.5
882,776 - AO356_03960 0.88 +0.4
882,776 - AO356_03960 0.88 -0.4
882,776 - AO356_03960 0.88 +0.8
882,787 + AO356_03960 0.90 -1.0
882,787 + AO356_03960 0.90 +1.2
882,787 + AO356_03960 0.90 +0.1
882,788 - +0.2
882,788 - -0.6
882,788 - -0.3
882,788 - +0.4
882,848 + +1.1
882,849 - +1.1
882,885 - +0.7
882,928 - -0.1
882,944 + -1.2
882,944 + +0.6
882,945 - +0.4
882,963 + +0.8
882,963 + -0.5
882,963 + +0.0
882,963 + +0.1
882,964 - -0.9
882,964 - +0.2
882,964 - +0.5
882,964 - +0.2
882,964 - +1.2
882,964 - +1.4
883,008 + AO356_03965 0.13 -0.3
883,026 - AO356_03965 0.15 +0.4
883,041 + AO356_03965 0.16 -0.1
883,041 + AO356_03965 0.16 -0.2
883,081 - AO356_03965 0.20 +0.3
883,081 - AO356_03965 0.20 -2.2
883,081 - AO356_03965 0.20 -0.6
883,134 + AO356_03965 0.24 +0.8
883,134 + AO356_03965 0.24 -0.9
883,135 - AO356_03965 0.25 -0.3
883,212 + AO356_03965 0.31 +1.4
883,212 + AO356_03965 0.31 +0.6
883,213 - AO356_03965 0.32 -0.6
883,254 + AO356_03965 0.35 +1.4
883,254 + AO356_03965 0.35 -0.3
883,254 + AO356_03965 0.35 +0.9
883,255 - AO356_03965 0.35 -0.4
883,259 + AO356_03965 0.36 +0.4
883,260 - AO356_03965 0.36 -0.3
883,260 - AO356_03965 0.36 +0.6
883,260 - AO356_03965 0.36 +0.6
883,260 - AO356_03965 0.36 +0.5
883,359 + AO356_03965 0.45 +0.9
883,360 - AO356_03965 0.45 -0.4
883,360 - AO356_03965 0.45 +1.1
883,417 + AO356_03965 0.50 +0.1
883,417 + AO356_03965 0.50 +1.1
883,417 + AO356_03965 0.50 +1.0
883,417 + AO356_03965 0.50 +0.5
883,417 + AO356_03965 0.50 -0.2
883,418 - AO356_03965 0.50 +0.6
883,418 - AO356_03965 0.50 +0.5
883,518 + AO356_03965 0.59 -0.1
883,518 + AO356_03965 0.59 +0.2
883,518 + AO356_03965 0.59 +0.1
883,518 + AO356_03965 0.59 -0.2
883,518 + AO356_03965 0.59 +0.4
883,519 - AO356_03965 0.59 +1.0
883,519 - AO356_03965 0.59 +0.9
883,519 - AO356_03965 0.59 +0.4
883,522 + AO356_03965 0.59 +0.2
883,522 + AO356_03965 0.59 +1.2
883,523 - AO356_03965 0.59 +0.8
883,523 - AO356_03965 0.59 -1.0
883,523 - AO356_03965 0.59 -0.9
883,536 + AO356_03965 0.60 -0.3
883,537 - AO356_03965 0.61 -0.8
883,584 + AO356_03965 0.65 +0.0
883,585 - AO356_03965 0.65 +0.5
883,734 + AO356_03965 0.78 +0.9
883,837 - AO356_03965 0.87 +0.1
883,837 - AO356_03965 0.87 -0.1
883,894 + +0.4
883,894 + -0.4
883,894 + +0.3
883,894 + +0.5
883,917 + +0.4
883,917 + +0.6
883,917 + +0.6
883,943 + -0.6
883,943 + -0.5
883,944 - +0.9
883,982 + -0.4
883,982 + -0.3
883,982 + -1.3
883,982 + -0.8
883,983 - -0.5
883,983 - +0.8
883,987 + -0.3
884,054 - +0.5
884,054 - -0.1
884,054 - +0.0
884,160 - +0.5
884,183 + -0.2
884,183 + +0.1
884,183 + -0.5
884,184 - -0.1
884,184 - -0.4
884,184 - -1.8
884,184 - +0.6
884,184 - -1.3
884,184 - -0.5
884,196 + +0.4
884,196 + +0.9
884,264 + +0.5
884,264 + +0.1
884,265 - -0.7
884,373 + AO356_03970 0.14 -0.0
884,462 + AO356_03970 0.19 +0.1
884,463 - AO356_03970 0.20 -0.1
884,621 + AO356_03970 0.30 -0.6
884,621 + AO356_03970 0.30 -0.2
884,621 + AO356_03970 0.30 +0.5
884,621 + AO356_03970 0.30 +0.3
884,702 + AO356_03970 0.35 -0.7
884,702 + AO356_03970 0.35 +0.0
884,702 + AO356_03970 0.35 -0.0
884,702 + AO356_03970 0.35 -0.3
884,702 + AO356_03970 0.35 -0.1
884,703 - AO356_03970 0.35 +1.1
884,703 - AO356_03970 0.35 -1.0
884,703 - AO356_03970 0.35 +0.4
884,703 - AO356_03970 0.35 -1.4
884,703 - AO356_03970 0.35 +0.7
884,703 - AO356_03970 0.35 -2.5

Or see this region's nucleotide sequence