Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03610

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03605 and AO356_03610 are separated by 446 nucleotidesAO356_03610 and AO356_03615 are separated by 387 nucleotidesAO356_03615 and AO356_03620 are separated by 14 nucleotides AO356_03605: AO356_03605 - short-chain dehydrogenase, at 805,708 to 806,523 _03605 AO356_03610: AO356_03610 - hypothetical protein, at 806,970 to 809,063 _03610 AO356_03615: AO356_03615 - hypothetical protein, at 809,451 to 809,858 _03615 AO356_03620: AO356_03620 - cytochrome C, at 809,873 to 811,075 _03620 Position (kb) 806 807 808 809 810Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 805.999 kb on + strand, within AO356_03605at 806.000 kb on - strand, within AO356_03605at 806.075 kb on + strand, within AO356_03605at 806.075 kb on + strand, within AO356_03605at 806.075 kb on + strand, within AO356_03605at 806.076 kb on - strand, within AO356_03605at 806.076 kb on - strand, within AO356_03605at 806.076 kb on - strand, within AO356_03605at 806.336 kb on + strand, within AO356_03605at 806.336 kb on + strand, within AO356_03605at 806.337 kb on - strand, within AO356_03605at 806.337 kb on - strand, within AO356_03605at 806.523 kb on + strandat 806.523 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.561 kb on + strandat 806.561 kb on + strandat 806.561 kb on + strandat 806.670 kb on + strandat 806.671 kb on - strandat 806.671 kb on - strandat 806.673 kb on + strandat 806.673 kb on + strandat 806.674 kb on - strandat 806.674 kb on - strandat 806.688 kb on + strandat 806.689 kb on - strandat 806.705 kb on + strandat 806.705 kb on + strandat 806.705 kb on + strandat 806.705 kb on + strandat 806.706 kb on - strandat 806.716 kb on + strandat 806.717 kb on - strandat 806.717 kb on - strandat 806.717 kb on - strandat 806.740 kb on - strandat 806.764 kb on + strandat 806.764 kb on + strandat 806.764 kb on + strandat 806.764 kb on + strandat 806.764 kb on + strandat 806.765 kb on - strandat 806.765 kb on - strandat 806.768 kb on + strandat 806.768 kb on + strandat 806.768 kb on + strandat 806.768 kb on + strandat 806.768 kb on + strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.769 kb on - strandat 806.860 kb on + strandat 806.860 kb on + strandat 806.860 kb on + strandat 806.861 kb on - strandat 806.861 kb on - strandat 806.861 kb on - strandat 806.887 kb on + strandat 806.890 kb on + strandat 806.890 kb on + strandat 806.891 kb on - strandat 806.902 kb on + strandat 806.902 kb on + strandat 806.902 kb on + strandat 806.902 kb on + strandat 806.902 kb on + strandat 806.902 kb on + strandat 806.903 kb on - strandat 806.904 kb on + strandat 806.904 kb on + strandat 806.904 kb on + strandat 806.904 kb on + strandat 806.904 kb on + strandat 806.904 kb on + strandat 806.905 kb on - strandat 806.905 kb on - strandat 806.905 kb on - strandat 806.912 kb on + strandat 806.913 kb on - strandat 806.917 kb on - strandat 806.917 kb on - strandat 806.917 kb on - strandat 806.940 kb on + strandat 806.968 kb on + strandat 807.124 kb on + strandat 807.125 kb on - strandat 807.283 kb on - strand, within AO356_03610at 807.487 kb on + strand, within AO356_03610at 807.487 kb on + strand, within AO356_03610at 807.487 kb on + strand, within AO356_03610at 807.487 kb on + strand, within AO356_03610at 807.487 kb on + strand, within AO356_03610at 807.487 kb on + strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.488 kb on - strand, within AO356_03610at 807.616 kb on + strand, within AO356_03610at 807.616 kb on + strand, within AO356_03610at 807.652 kb on + strand, within AO356_03610at 807.652 kb on + strand, within AO356_03610at 807.652 kb on + strand, within AO356_03610at 807.652 kb on + strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.653 kb on - strand, within AO356_03610at 807.764 kb on + strand, within AO356_03610at 807.838 kb on + strand, within AO356_03610at 807.839 kb on - strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.844 kb on + strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.845 kb on - strand, within AO356_03610at 807.856 kb on + strand, within AO356_03610at 807.857 kb on - strand, within AO356_03610at 807.925 kb on + strand, within AO356_03610at 807.971 kb on + strand, within AO356_03610at 807.971 kb on + strand, within AO356_03610at 807.971 kb on + strand, within AO356_03610at 807.971 kb on + strand, within AO356_03610at 807.972 kb on - strand, within AO356_03610at 807.972 kb on - strand, within AO356_03610at 807.972 kb on - strand, within AO356_03610at 807.972 kb on - strand, within AO356_03610at 807.972 kb on - strand, within AO356_03610at 807.972 kb on - strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.045 kb on + strand, within AO356_03610at 808.046 kb on - strand, within AO356_03610at 808.046 kb on - strand, within AO356_03610at 808.046 kb on - strand, within AO356_03610at 808.046 kb on - strand, within AO356_03610at 808.369 kb on + strand, within AO356_03610at 808.369 kb on + strand, within AO356_03610at 808.369 kb on + strand, within AO356_03610at 808.369 kb on + strand, within AO356_03610at 808.369 kb on + strand, within AO356_03610at 808.369 kb on + strand, within AO356_03610at 808.369 kb on + strand, within AO356_03610at 808.370 kb on - strand, within AO356_03610at 808.468 kb on + strand, within AO356_03610at 808.496 kb on + strand, within AO356_03610at 808.497 kb on - strand, within AO356_03610at 808.497 kb on - strand, within AO356_03610at 808.500 kb on - strand, within AO356_03610at 808.657 kb on + strand, within AO356_03610at 808.657 kb on + strand, within AO356_03610at 808.657 kb on + strand, within AO356_03610at 808.657 kb on + strand, within AO356_03610at 808.657 kb on + strand, within AO356_03610at 808.657 kb on + strand, within AO356_03610at 808.657 kb on + strand, within AO356_03610at 808.658 kb on - strand, within AO356_03610at 808.700 kb on - strand, within AO356_03610at 808.828 kb on + strand, within AO356_03610at 808.828 kb on + strand, within AO356_03610at 808.829 kb on - strand, within AO356_03610at 808.829 kb on - strand, within AO356_03610at 808.829 kb on - strand, within AO356_03610at 808.829 kb on - strand, within AO356_03610at 808.829 kb on - strand, within AO356_03610at 808.918 kb on + strandat 808.918 kb on + strandat 808.918 kb on + strandat 808.918 kb on + strandat 808.918 kb on + strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.947 kb on + strandat 808.948 kb on - strandat 808.948 kb on - strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.952 kb on + strandat 808.953 kb on - strandat 808.953 kb on - strandat 808.953 kb on - strandat 808.953 kb on - strandat 808.984 kb on + strandat 808.985 kb on - strandat 809.071 kb on - strandat 809.181 kb on - strandat 809.194 kb on + strandat 809.194 kb on + strandat 809.194 kb on + strandat 809.194 kb on + strandat 809.195 kb on - strandat 809.314 kb on + strandat 809.314 kb on + strandat 809.314 kb on + strandat 809.314 kb on + strandat 809.315 kb on - strandat 809.332 kb on + strandat 809.333 kb on - strandat 809.555 kb on - strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.557 kb on + strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.558 kb on - strand, within AO356_03615at 809.561 kb on + strand, within AO356_03615at 809.561 kb on + strand, within AO356_03615at 809.561 kb on + strand, within AO356_03615at 809.562 kb on - strand, within AO356_03615at 809.572 kb on + strand, within AO356_03615at 809.573 kb on - strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.579 kb on + strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.580 kb on - strand, within AO356_03615at 809.602 kb on + strand, within AO356_03615at 809.602 kb on + strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.603 kb on - strand, within AO356_03615at 809.841 kb on - strandat 809.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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805,999 + AO356_03605 0.36 -0.8
806,000 - AO356_03605 0.36 -0.7
806,075 + AO356_03605 0.45 +0.8
806,075 + AO356_03605 0.45 +0.1
806,075 + AO356_03605 0.45 +0.5
806,076 - AO356_03605 0.45 +0.8
806,076 - AO356_03605 0.45 +0.1
806,076 - AO356_03605 0.45 +1.0
806,336 + AO356_03605 0.77 -1.3
806,336 + AO356_03605 0.77 -1.2
806,337 - AO356_03605 0.77 -0.2
806,337 - AO356_03605 0.77 +0.0
806,523 + -0.1
806,523 + +0.0
806,550 + -0.9
806,550 + -0.1
806,550 + -0.8
806,550 + -1.9
806,561 + +0.7
806,561 + +0.3
806,561 + -0.8
806,670 + -0.5
806,671 - +1.1
806,671 - -1.1
806,673 + +0.6
806,673 + +0.4
806,674 - -0.4
806,674 - -1.2
806,688 + -1.2
806,689 - +0.6
806,705 + -0.4
806,705 + +1.0
806,705 + -3.2
806,705 + +0.3
806,706 - +0.0
806,716 + -1.5
806,717 - +0.4
806,717 - +1.1
806,717 - +0.4
806,740 - +0.2
806,764 + +0.1
806,764 + +0.5
806,764 + +1.3
806,764 + -0.5
806,764 + +0.3
806,765 - -0.3
806,765 - +0.1
806,768 + -1.0
806,768 + +0.5
806,768 + +0.7
806,768 + -0.8
806,768 + +0.5
806,769 - +0.2
806,769 - +0.4
806,769 - +0.4
806,769 - -0.1
806,769 - +0.1
806,769 - +0.0
806,769 - +1.3
806,769 - -0.8
806,769 - +0.0
806,860 + -0.1
806,860 + +0.0
806,860 + +0.6
806,861 - -0.0
806,861 - -1.1
806,861 - +0.1
806,887 + -1.8
806,890 + -0.4
806,890 + -0.1
806,891 - -0.8
806,902 + +1.3
806,902 + +0.6
806,902 + +0.4
806,902 + +0.2
806,902 + +0.4
806,902 + -1.2
806,903 - +0.0
806,904 + +0.0
806,904 + +0.3
806,904 + -0.9
806,904 + -0.1
806,904 + -1.3
806,904 + -0.3
806,905 - -0.7
806,905 - +0.5
806,905 - +0.3
806,912 + +0.3
806,913 - -0.0
806,917 - -0.8
806,917 - +0.4
806,917 - -0.8
806,940 + -0.4
806,968 + +0.1
807,124 + +1.0
807,125 - +0.1
807,283 - AO356_03610 0.15 +0.4
807,487 + AO356_03610 0.25 +1.4
807,487 + AO356_03610 0.25 -0.4
807,487 + AO356_03610 0.25 +0.6
807,487 + AO356_03610 0.25 +0.7
807,487 + AO356_03610 0.25 -0.1
807,487 + AO356_03610 0.25 +0.1
807,488 - AO356_03610 0.25 -0.6
807,488 - AO356_03610 0.25 +0.4
807,488 - AO356_03610 0.25 -0.5
807,488 - AO356_03610 0.25 +0.2
807,488 - AO356_03610 0.25 +0.5
807,488 - AO356_03610 0.25 +0.4
807,488 - AO356_03610 0.25 -0.3
807,488 - AO356_03610 0.25 +0.9
807,488 - AO356_03610 0.25 -0.5
807,616 + AO356_03610 0.31 -0.0
807,616 + AO356_03610 0.31 -0.3
807,652 + AO356_03610 0.33 +0.4
807,652 + AO356_03610 0.33 +0.2
807,652 + AO356_03610 0.33 +0.8
807,652 + AO356_03610 0.33 +0.5
807,653 - AO356_03610 0.33 +0.4
807,653 - AO356_03610 0.33 -1.5
807,653 - AO356_03610 0.33 +0.3
807,653 - AO356_03610 0.33 +0.2
807,653 - AO356_03610 0.33 -0.5
807,653 - AO356_03610 0.33 -0.7
807,653 - AO356_03610 0.33 +0.5
807,653 - AO356_03610 0.33 +0.5
807,764 + AO356_03610 0.38 +1.7
807,838 + AO356_03610 0.41 -0.1
807,839 - AO356_03610 0.41 +0.7
807,844 + AO356_03610 0.42 +0.9
807,844 + AO356_03610 0.42 +0.6
807,844 + AO356_03610 0.42 +0.1
807,844 + AO356_03610 0.42 -0.5
807,844 + AO356_03610 0.42 +0.0
807,844 + AO356_03610 0.42 +0.7
807,844 + AO356_03610 0.42 +0.1
807,844 + AO356_03610 0.42 +0.1
807,844 + AO356_03610 0.42 -0.8
807,844 + AO356_03610 0.42 +0.1
807,844 + AO356_03610 0.42 -0.2
807,844 + AO356_03610 0.42 +0.6
807,844 + AO356_03610 0.42 -0.8
807,844 + AO356_03610 0.42 +0.7
807,844 + AO356_03610 0.42 -0.2
807,845 - AO356_03610 0.42 +0.2
807,845 - AO356_03610 0.42 +0.4
807,845 - AO356_03610 0.42 +0.6
807,845 - AO356_03610 0.42 -0.3
807,845 - AO356_03610 0.42 +0.3
807,845 - AO356_03610 0.42 +0.6
807,845 - AO356_03610 0.42 +0.3
807,845 - AO356_03610 0.42 +0.1
807,845 - AO356_03610 0.42 -0.2
807,845 - AO356_03610 0.42 -0.2
807,856 + AO356_03610 0.42 +0.9
807,857 - AO356_03610 0.42 -0.7
807,925 + AO356_03610 0.46 +0.7
807,971 + AO356_03610 0.48 +0.9
807,971 + AO356_03610 0.48 -0.5
807,971 + AO356_03610 0.48 +0.2
807,971 + AO356_03610 0.48 +0.5
807,972 - AO356_03610 0.48 -1.7
807,972 - AO356_03610 0.48 -0.2
807,972 - AO356_03610 0.48 -0.3
807,972 - AO356_03610 0.48 -0.4
807,972 - AO356_03610 0.48 +0.5
807,972 - AO356_03610 0.48 +0.8
808,045 + AO356_03610 0.51 -0.5
808,045 + AO356_03610 0.51 +0.1
808,045 + AO356_03610 0.51 -0.2
808,045 + AO356_03610 0.51 +0.6
808,045 + AO356_03610 0.51 +0.2
808,045 + AO356_03610 0.51 -0.2
808,045 + AO356_03610 0.51 -0.3
808,045 + AO356_03610 0.51 -1.3
808,045 + AO356_03610 0.51 -0.1
808,046 - AO356_03610 0.51 -0.1
808,046 - AO356_03610 0.51 -1.0
808,046 - AO356_03610 0.51 +0.7
808,046 - AO356_03610 0.51 -0.8
808,369 + AO356_03610 0.67 +0.3
808,369 + AO356_03610 0.67 +0.2
808,369 + AO356_03610 0.67 -0.2
808,369 + AO356_03610 0.67 -0.2
808,369 + AO356_03610 0.67 +2.3
808,369 + AO356_03610 0.67 -0.2
808,369 + AO356_03610 0.67 +0.5
808,370 - AO356_03610 0.67 +0.5
808,468 + AO356_03610 0.72 -0.1
808,496 + AO356_03610 0.73 -1.3
808,497 - AO356_03610 0.73 +0.2
808,497 - AO356_03610 0.73 -0.1
808,500 - AO356_03610 0.73 -0.2
808,657 + AO356_03610 0.81 +1.1
808,657 + AO356_03610 0.81 +0.4
808,657 + AO356_03610 0.81 +0.6
808,657 + AO356_03610 0.81 -0.4
808,657 + AO356_03610 0.81 +0.4
808,657 + AO356_03610 0.81 +0.4
808,657 + AO356_03610 0.81 +0.1
808,658 - AO356_03610 0.81 +0.4
808,700 - AO356_03610 0.83 +1.1
808,828 + AO356_03610 0.89 +0.0
808,828 + AO356_03610 0.89 +0.4
808,829 - AO356_03610 0.89 +0.1
808,829 - AO356_03610 0.89 -0.0
808,829 - AO356_03610 0.89 +0.4
808,829 - AO356_03610 0.89 -0.1
808,829 - AO356_03610 0.89 +1.1
808,918 + -0.6
808,918 + +0.1
808,918 + +0.6
808,918 + +0.7
808,918 + +0.3
808,919 - +0.6
808,919 - -0.4
808,919 - -1.4
808,919 - +0.5
808,919 - -0.3
808,919 - -0.3
808,919 - +1.4
808,919 - +0.5
808,919 - -0.9
808,947 + -0.6
808,948 - -0.2
808,948 - -1.5
808,952 + -0.3
808,952 + -0.1
808,952 + +0.1
808,952 + +0.0
808,952 + -0.1
808,952 + +0.3
808,953 - -0.5
808,953 - +0.4
808,953 - -0.3
808,953 - +0.2
808,984 + +0.3
808,985 - +1.7
809,071 - -1.0
809,181 - +1.0
809,194 + -0.1
809,194 + -0.1
809,194 + +0.6
809,194 + +0.5
809,195 - +1.3
809,314 + -0.6
809,314 + +0.3
809,314 + -1.1
809,314 + +0.1
809,315 - +0.5
809,332 + +0.3
809,333 - -0.1
809,555 - AO356_03615 0.25 +0.3
809,557 + AO356_03615 0.26 -0.1
809,557 + AO356_03615 0.26 -0.1
809,557 + AO356_03615 0.26 +0.9
809,557 + AO356_03615 0.26 -0.3
809,557 + AO356_03615 0.26 -0.5
809,557 + AO356_03615 0.26 +0.1
809,558 - AO356_03615 0.26 +0.5
809,558 - AO356_03615 0.26 +0.0
809,558 - AO356_03615 0.26 -0.2
809,558 - AO356_03615 0.26 +0.3
809,558 - AO356_03615 0.26 -0.2
809,558 - AO356_03615 0.26 +0.2
809,558 - AO356_03615 0.26 +0.3
809,558 - AO356_03615 0.26 -0.3
809,561 + AO356_03615 0.27 +0.2
809,561 + AO356_03615 0.27 +0.8
809,561 + AO356_03615 0.27 -0.1
809,562 - AO356_03615 0.27 +0.3
809,572 + AO356_03615 0.30 +0.1
809,573 - AO356_03615 0.30 +1.5
809,579 + AO356_03615 0.31 +0.1
809,579 + AO356_03615 0.31 +1.6
809,579 + AO356_03615 0.31 +0.9
809,579 + AO356_03615 0.31 -0.6
809,579 + AO356_03615 0.31 -0.7
809,579 + AO356_03615 0.31 +0.2
809,579 + AO356_03615 0.31 -0.7
809,580 - AO356_03615 0.32 +0.7
809,580 - AO356_03615 0.32 -0.6
809,580 - AO356_03615 0.32 +0.8
809,580 - AO356_03615 0.32 +0.3
809,580 - AO356_03615 0.32 -0.7
809,580 - AO356_03615 0.32 -0.1
809,602 + AO356_03615 0.37 +0.6
809,602 + AO356_03615 0.37 +1.4
809,603 - AO356_03615 0.37 -0.6
809,603 - AO356_03615 0.37 -0.3
809,603 - AO356_03615 0.37 +0.4
809,603 - AO356_03615 0.37 -0.1
809,841 - +0.4
809,874 + -0.4

Or see this region's nucleotide sequence