Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03590 and AO356_03595 overlap by 12 nucleotides AO356_03595 and AO356_03600 are separated by 151 nucleotides AO356_03600 and AO356_03605 are separated by 57 nucleotides AO356_03605 and AO356_03610 are separated by 446 nucleotides
AO356_03590: AO356_03590 - hypothetical protein, at 804,750 to 804,977
_03590
AO356_03595: AO356_03595 - carbon storage regulator, at 804,966 to 805,166
_03595
AO356_03600: AO356_03600 - putative efflux pump, required for thallium (I) resistance <small>(from data)</small>, at 805,318 to 805,650
_03600
AO356_03605: AO356_03605 - short-chain dehydrogenase, at 805,708 to 806,523
_03605
AO356_03610: AO356_03610 - hypothetical protein, at 806,970 to 809,063
_03610
Position (kb) 805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 804.736 kb on - strand at 804.744 kb on + strand at 804.744 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.968 kb on - strand at 804.968 kb on - strand at 805.115 kb on + strand, within AO356_03595 at 805.116 kb on - strand, within AO356_03595 at 805.156 kb on - strand at 805.158 kb on + strand at 805.159 kb on - strand at 805.159 kb on - strand at 805.159 kb on - strand at 805.179 kb on + strand at 805.180 kb on - strand at 805.254 kb on + strand at 805.255 kb on - strand at 805.309 kb on + strand at 805.310 kb on - strand at 805.310 kb on - strand at 805.310 kb on - strand at 805.310 kb on - strand at 805.314 kb on + strand at 805.315 kb on - strand at 805.346 kb on - strand at 805.346 kb on - strand at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.487 kb on + strand, within AO356_03600 at 805.487 kb on + strand, within AO356_03600 at 805.595 kb on + strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.640 kb on + strand at 805.640 kb on + strand at 805.640 kb on + strand at 805.640 kb on + strand at 805.640 kb on + strand at 805.641 kb on - strand at 805.641 kb on - strand at 805.641 kb on - strand at 805.862 kb on + strand, within AO356_03605 at 805.862 kb on + strand, within AO356_03605 at 805.862 kb on + strand, within AO356_03605 at 805.863 kb on - strand, within AO356_03605 at 805.863 kb on - strand, within AO356_03605 at 805.863 kb on - strand, within AO356_03605 at 805.868 kb on + strand, within AO356_03605 at 805.868 kb on + strand, within AO356_03605 at 805.868 kb on + strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.999 kb on + strand, within AO356_03605 at 806.000 kb on - strand, within AO356_03605 at 806.075 kb on + strand, within AO356_03605 at 806.075 kb on + strand, within AO356_03605 at 806.075 kb on + strand, within AO356_03605 at 806.076 kb on - strand, within AO356_03605 at 806.076 kb on - strand, within AO356_03605 at 806.076 kb on - strand, within AO356_03605 at 806.336 kb on + strand, within AO356_03605 at 806.336 kb on + strand, within AO356_03605 at 806.337 kb on - strand, within AO356_03605 at 806.337 kb on - strand, within AO356_03605 at 806.523 kb on + strand at 806.523 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.561 kb on + strand at 806.561 kb on + strand at 806.561 kb on + strand at 806.670 kb on + strand at 806.671 kb on - strand at 806.671 kb on - strand at 806.673 kb on + strand at 806.673 kb on + strand at 806.674 kb on - strand at 806.674 kb on - strand at 806.688 kb on + strand at 806.689 kb on - strand at 806.705 kb on + strand at 806.705 kb on + strand at 806.705 kb on + strand at 806.705 kb on + strand at 806.706 kb on - strand at 806.716 kb on + strand at 806.717 kb on - strand at 806.717 kb on - strand at 806.717 kb on - strand at 806.740 kb on - strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.765 kb on - strand at 806.765 kb on - strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.860 kb on + strand at 806.860 kb on + strand at 806.860 kb on + strand at 806.861 kb on - strand at 806.861 kb on - strand at 806.861 kb on - strand at 806.887 kb on + strand at 806.890 kb on + strand at 806.890 kb on + strand at 806.891 kb on - strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.903 kb on - strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.905 kb on - strand at 806.905 kb on - strand at 806.905 kb on - strand at 806.912 kb on + strand at 806.913 kb on - strand at 806.917 kb on - strand at 806.917 kb on - strand at 806.917 kb on - strand at 806.940 kb on + strand at 806.968 kb on + strand at 807.124 kb on + strand at 807.125 kb on - strand at 807.283 kb on - strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 804,736 - -0.1 804,744 + -0.3 804,744 + -0.2 804,967 + +0.1 804,967 + -0.4 804,967 + -0.6 804,967 + -0.0 804,967 + -0.2 804,968 - +0.6 804,968 - +1.4 805,115 + AO356_03595 0.74 -0.9 805,116 - AO356_03595 0.75 +0.3 805,156 - -0.8 805,158 + -0.4 805,159 - +0.8 805,159 - -0.3 805,159 - +0.1 805,179 + +0.4 805,180 - +2.5 805,254 + -2.3 805,255 - -0.3 805,309 + +0.0 805,310 - +0.7 805,310 - +0.3 805,310 - +0.1 805,310 - +1.3 805,314 + -2.2 805,315 - +1.4 805,346 - -0.0 805,346 - -0.8 805,449 + AO356_03600 0.39 +0.8 805,449 + AO356_03600 0.39 +0.2 805,449 + AO356_03600 0.39 +0.5 805,449 + AO356_03600 0.39 +0.4 805,449 + AO356_03600 0.39 +1.4 805,450 - AO356_03600 0.40 +0.2 805,450 - AO356_03600 0.40 -0.5 805,450 - AO356_03600 0.40 +0.0 805,450 - AO356_03600 0.40 +1.5 805,451 + AO356_03600 0.40 -0.7 805,451 + AO356_03600 0.40 +0.3 805,451 + AO356_03600 0.40 +0.0 805,451 + AO356_03600 0.40 +0.1 805,451 + AO356_03600 0.40 +0.1 805,451 + AO356_03600 0.40 +0.7 805,451 + AO356_03600 0.40 +0.0 805,451 + AO356_03600 0.40 -0.5 805,451 + AO356_03600 0.40 +0.1 805,451 + AO356_03600 0.40 +1.2 805,451 + AO356_03600 0.40 -0.2 805,452 - AO356_03600 0.40 +0.1 805,452 - AO356_03600 0.40 -1.6 805,452 - AO356_03600 0.40 +0.3 805,452 - AO356_03600 0.40 -1.6 805,452 - AO356_03600 0.40 -0.0 805,452 - AO356_03600 0.40 +0.7 805,452 - AO356_03600 0.40 +0.3 805,452 - AO356_03600 0.40 +0.0 805,452 - AO356_03600 0.40 +0.4 805,487 + AO356_03600 0.51 -1.1 805,487 + AO356_03600 0.51 -0.4 805,595 + AO356_03600 0.83 -0.7 805,596 - AO356_03600 0.83 +0.7 805,596 - AO356_03600 0.83 -0.6 805,596 - AO356_03600 0.83 -0.1 805,596 - AO356_03600 0.83 -0.6 805,640 + -1.3 805,640 + +0.7 805,640 + -0.8 805,640 + -0.8 805,640 + -0.1 805,641 - -1.8 805,641 - -0.4 805,641 - -1.4 805,862 + AO356_03605 0.19 +0.9 805,862 + AO356_03605 0.19 -1.7 805,862 + AO356_03605 0.19 -0.3 805,863 - AO356_03605 0.19 +0.1 805,863 - AO356_03605 0.19 +0.3 805,863 - AO356_03605 0.19 +0.6 805,868 + AO356_03605 0.20 -0.4 805,868 + AO356_03605 0.20 +0.2 805,868 + AO356_03605 0.20 -0.4 805,869 - AO356_03605 0.20 -0.2 805,869 - AO356_03605 0.20 +0.2 805,869 - AO356_03605 0.20 +1.3 805,869 - AO356_03605 0.20 -0.3 805,999 + AO356_03605 0.36 -0.8 806,000 - AO356_03605 0.36 -0.7 806,075 + AO356_03605 0.45 +0.8 806,075 + AO356_03605 0.45 +0.1 806,075 + AO356_03605 0.45 +0.5 806,076 - AO356_03605 0.45 +0.8 806,076 - AO356_03605 0.45 +0.1 806,076 - AO356_03605 0.45 +1.0 806,336 + AO356_03605 0.77 -1.3 806,336 + AO356_03605 0.77 -1.2 806,337 - AO356_03605 0.77 -0.2 806,337 - AO356_03605 0.77 +0.0 806,523 + -0.1 806,523 + +0.0 806,550 + -0.9 806,550 + -0.1 806,550 + -0.8 806,550 + -1.9 806,561 + +0.7 806,561 + +0.3 806,561 + -0.8 806,670 + -0.5 806,671 - +1.1 806,671 - -1.1 806,673 + +0.6 806,673 + +0.4 806,674 - -0.4 806,674 - -1.2 806,688 + -1.2 806,689 - +0.6 806,705 + -0.4 806,705 + +1.0 806,705 + -3.2 806,705 + +0.3 806,706 - +0.0 806,716 + -1.5 806,717 - +0.4 806,717 - +1.1 806,717 - +0.4 806,740 - +0.2 806,764 + +0.1 806,764 + +0.5 806,764 + +1.3 806,764 + -0.5 806,764 + +0.3 806,765 - -0.3 806,765 - +0.1 806,768 + -1.0 806,768 + +0.5 806,768 + +0.7 806,768 + -0.8 806,768 + +0.5 806,769 - +0.2 806,769 - +0.4 806,769 - +0.4 806,769 - -0.1 806,769 - +0.1 806,769 - +0.0 806,769 - +1.3 806,769 - -0.8 806,769 - +0.0 806,860 + -0.1 806,860 + +0.0 806,860 + +0.6 806,861 - -0.0 806,861 - -1.1 806,861 - +0.1 806,887 + -1.8 806,890 + -0.4 806,890 + -0.1 806,891 - -0.8 806,902 + +1.3 806,902 + +0.6 806,902 + +0.4 806,902 + +0.2 806,902 + +0.4 806,902 + -1.2 806,903 - +0.0 806,904 + +0.0 806,904 + +0.3 806,904 + -0.9 806,904 + -0.1 806,904 + -1.3 806,904 + -0.3 806,905 - -0.7 806,905 - +0.5 806,905 - +0.3 806,912 + +0.3 806,913 - -0.0 806,917 - -0.8 806,917 - +0.4 806,917 - -0.8 806,940 + -0.4 806,968 + +0.1 807,124 + +1.0 807,125 - +0.1 807,283 - AO356_03610 0.15 +0.4 807,487 + AO356_03610 0.25 +1.4 807,487 + AO356_03610 0.25 -0.4 807,487 + AO356_03610 0.25 +0.6 807,487 + AO356_03610 0.25 +0.7 807,487 + AO356_03610 0.25 -0.1 807,487 + AO356_03610 0.25 +0.1 807,488 - AO356_03610 0.25 -0.6 807,488 - AO356_03610 0.25 +0.4 807,488 - AO356_03610 0.25 -0.5 807,488 - AO356_03610 0.25 +0.2 807,488 - AO356_03610 0.25 +0.5 807,488 - AO356_03610 0.25 +0.4 807,488 - AO356_03610 0.25 -0.3 807,488 - AO356_03610 0.25 +0.9 807,488 - AO356_03610 0.25 -0.5
Or see this region's nucleotide sequence