Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03600

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03585 and AO356_03590 are separated by 181 nucleotidesAO356_03590 and AO356_03595 overlap by 12 nucleotidesAO356_03595 and AO356_03600 are separated by 151 nucleotidesAO356_03600 and AO356_03605 are separated by 57 nucleotides AO356_03585: AO356_03585 - peptidase M42, at 803,378 to 804,568 _03585 AO356_03590: AO356_03590 - hypothetical protein, at 804,750 to 804,977 _03590 AO356_03595: AO356_03595 - carbon storage regulator, at 804,966 to 805,166 _03595 AO356_03600: AO356_03600 - putative efflux pump, required for thallium (I) resistance (from data), at 805,318 to 805,650 _03600 AO356_03605: AO356_03605 - short-chain dehydrogenase, at 805,708 to 806,523 _03605 Position (kb) 805 806Strain fitness (log2 ratio) -2 -1 0 1 2at 804.359 kb on + strand, within AO356_03585at 804.413 kb on + strand, within AO356_03585at 804.413 kb on + strand, within AO356_03585at 804.414 kb on - strand, within AO356_03585at 804.414 kb on - strand, within AO356_03585at 804.736 kb on - strandat 804.744 kb on + strandat 804.744 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.968 kb on - strandat 804.968 kb on - strandat 805.115 kb on + strand, within AO356_03595at 805.116 kb on - strand, within AO356_03595at 805.156 kb on - strandat 805.158 kb on + strandat 805.159 kb on - strandat 805.159 kb on - strandat 805.159 kb on - strandat 805.179 kb on + strandat 805.180 kb on - strandat 805.254 kb on + strandat 805.255 kb on - strandat 805.309 kb on + strandat 805.310 kb on - strandat 805.310 kb on - strandat 805.310 kb on - strandat 805.310 kb on - strandat 805.314 kb on + strandat 805.315 kb on - strandat 805.346 kb on - strandat 805.346 kb on - strandat 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.487 kb on + strand, within AO356_03600at 805.487 kb on + strand, within AO356_03600at 805.595 kb on + strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.640 kb on + strandat 805.640 kb on + strandat 805.640 kb on + strandat 805.640 kb on + strandat 805.640 kb on + strandat 805.641 kb on - strandat 805.641 kb on - strandat 805.641 kb on - strandat 805.862 kb on + strand, within AO356_03605at 805.862 kb on + strand, within AO356_03605at 805.862 kb on + strand, within AO356_03605at 805.863 kb on - strand, within AO356_03605at 805.863 kb on - strand, within AO356_03605at 805.863 kb on - strand, within AO356_03605at 805.868 kb on + strand, within AO356_03605at 805.868 kb on + strand, within AO356_03605at 805.868 kb on + strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605at 805.999 kb on + strand, within AO356_03605at 806.000 kb on - strand, within AO356_03605at 806.075 kb on + strand, within AO356_03605at 806.075 kb on + strand, within AO356_03605at 806.075 kb on + strand, within AO356_03605at 806.076 kb on - strand, within AO356_03605at 806.076 kb on - strand, within AO356_03605at 806.076 kb on - strand, within AO356_03605at 806.336 kb on + strand, within AO356_03605at 806.336 kb on + strand, within AO356_03605at 806.337 kb on - strand, within AO356_03605at 806.337 kb on - strand, within AO356_03605at 806.523 kb on + strandat 806.523 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.561 kb on + strandat 806.561 kb on + strandat 806.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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804,359 + AO356_03585 0.82 -0.1
804,413 + AO356_03585 0.87 -0.0
804,413 + AO356_03585 0.87 +0.3
804,414 - AO356_03585 0.87 -0.2
804,414 - AO356_03585 0.87 -0.6
804,736 - -0.1
804,744 + -0.3
804,744 + -0.2
804,967 + +0.1
804,967 + -0.4
804,967 + -0.6
804,967 + -0.0
804,967 + -0.2
804,968 - +0.6
804,968 - +1.4
805,115 + AO356_03595 0.74 -0.9
805,116 - AO356_03595 0.75 +0.3
805,156 - -0.8
805,158 + -0.4
805,159 - +0.8
805,159 - -0.3
805,159 - +0.1
805,179 + +0.4
805,180 - +2.5
805,254 + -2.3
805,255 - -0.3
805,309 + +0.0
805,310 - +0.7
805,310 - +0.3
805,310 - +0.1
805,310 - +1.3
805,314 + -2.2
805,315 - +1.4
805,346 - -0.0
805,346 - -0.8
805,449 + AO356_03600 0.39 +0.8
805,449 + AO356_03600 0.39 +0.2
805,449 + AO356_03600 0.39 +0.5
805,449 + AO356_03600 0.39 +0.4
805,449 + AO356_03600 0.39 +1.4
805,450 - AO356_03600 0.40 +0.2
805,450 - AO356_03600 0.40 -0.5
805,450 - AO356_03600 0.40 +0.0
805,450 - AO356_03600 0.40 +1.5
805,451 + AO356_03600 0.40 -0.7
805,451 + AO356_03600 0.40 +0.3
805,451 + AO356_03600 0.40 +0.0
805,451 + AO356_03600 0.40 +0.1
805,451 + AO356_03600 0.40 +0.1
805,451 + AO356_03600 0.40 +0.7
805,451 + AO356_03600 0.40 +0.0
805,451 + AO356_03600 0.40 -0.5
805,451 + AO356_03600 0.40 +0.1
805,451 + AO356_03600 0.40 +1.2
805,451 + AO356_03600 0.40 -0.2
805,452 - AO356_03600 0.40 +0.1
805,452 - AO356_03600 0.40 -1.6
805,452 - AO356_03600 0.40 +0.3
805,452 - AO356_03600 0.40 -1.6
805,452 - AO356_03600 0.40 -0.0
805,452 - AO356_03600 0.40 +0.7
805,452 - AO356_03600 0.40 +0.3
805,452 - AO356_03600 0.40 +0.0
805,452 - AO356_03600 0.40 +0.4
805,487 + AO356_03600 0.51 -1.1
805,487 + AO356_03600 0.51 -0.4
805,595 + AO356_03600 0.83 -0.7
805,596 - AO356_03600 0.83 +0.7
805,596 - AO356_03600 0.83 -0.6
805,596 - AO356_03600 0.83 -0.1
805,596 - AO356_03600 0.83 -0.6
805,640 + -1.3
805,640 + +0.7
805,640 + -0.8
805,640 + -0.8
805,640 + -0.1
805,641 - -1.8
805,641 - -0.4
805,641 - -1.4
805,862 + AO356_03605 0.19 +0.9
805,862 + AO356_03605 0.19 -1.7
805,862 + AO356_03605 0.19 -0.3
805,863 - AO356_03605 0.19 +0.1
805,863 - AO356_03605 0.19 +0.3
805,863 - AO356_03605 0.19 +0.6
805,868 + AO356_03605 0.20 -0.4
805,868 + AO356_03605 0.20 +0.2
805,868 + AO356_03605 0.20 -0.4
805,869 - AO356_03605 0.20 -0.2
805,869 - AO356_03605 0.20 +0.2
805,869 - AO356_03605 0.20 +1.3
805,869 - AO356_03605 0.20 -0.3
805,999 + AO356_03605 0.36 -0.8
806,000 - AO356_03605 0.36 -0.7
806,075 + AO356_03605 0.45 +0.8
806,075 + AO356_03605 0.45 +0.1
806,075 + AO356_03605 0.45 +0.5
806,076 - AO356_03605 0.45 +0.8
806,076 - AO356_03605 0.45 +0.1
806,076 - AO356_03605 0.45 +1.0
806,336 + AO356_03605 0.77 -1.3
806,336 + AO356_03605 0.77 -1.2
806,337 - AO356_03605 0.77 -0.2
806,337 - AO356_03605 0.77 +0.0
806,523 + -0.1
806,523 + +0.0
806,550 + -0.9
806,550 + -0.1
806,550 + -0.8
806,550 + -1.9
806,561 + +0.7
806,561 + +0.3
806,561 + -0.8

Or see this region's nucleotide sequence