Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2987 and Shew_2988 are separated by 79 nucleotides Shew_2988 and Shew_2989 are separated by 241 nucleotides Shew_2989 and Shew_2990 are separated by 93 nucleotides
Shew_2987: Shew_2987 - LysR family transcriptional regulator (RefSeq), at 3,546,326 to 3,547,225
_2987
Shew_2988: Shew_2988 - putative signal transduction protein (RefSeq), at 3,547,305 to 3,548,030
_2988
Shew_2989: Shew_2989 - GDSL family lipase (RefSeq), at 3,548,272 to 3,548,883
_2989
Shew_2990: Shew_2990 - TonB-dependent receptor (RefSeq), at 3,548,977 to 3,550,947
_2990
Position (kb)
3547
3548
3549 Strain fitness (log2 ratio)
-1
0
1 at 3546.581 kb on + strand, within Shew_2987 at 3546.773 kb on - strand, within Shew_2987 at 3546.891 kb on - strand, within Shew_2987 at 3547.010 kb on + strand, within Shew_2987 at 3547.202 kb on - strand at 3547.352 kb on + strand at 3547.391 kb on + strand, within Shew_2988 at 3547.451 kb on + strand, within Shew_2988 at 3547.451 kb on + strand, within Shew_2988 at 3547.762 kb on + strand, within Shew_2988 at 3548.540 kb on + strand, within Shew_2989 at 3548.540 kb on + strand, within Shew_2989 at 3548.623 kb on - strand, within Shew_2989 at 3548.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,546,581 + Shew_2987 0.28 -0.0 3,546,773 - Shew_2987 0.50 +0.3 3,546,891 - Shew_2987 0.63 -0.1 3,547,010 + Shew_2987 0.76 +0.1 3,547,202 - -0.0 3,547,352 + +0.2 3,547,391 + Shew_2988 0.12 +0.1 3,547,451 + Shew_2988 0.20 +0.7 3,547,451 + Shew_2988 0.20 +0.4 3,547,762 + Shew_2988 0.63 +0.4 3,548,540 + Shew_2989 0.44 -1.5 3,548,540 + Shew_2989 0.44 -0.5 3,548,623 - Shew_2989 0.57 +0.6 3,548,921 - +0.7
Or see this region's nucleotide sequence