Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2735 and Shew_2736 are separated by 48 nucleotides Shew_2736 and Shew_2737 are separated by 202 nucleotides Shew_2737 and Shew_2738 are separated by 38 nucleotides Shew_2738 and Shew_2739 are separated by 389 nucleotides
Shew_2735: Shew_2735 - patatin (RefSeq), at 3,232,509 to 3,233,423
_2735
Shew_2736: Shew_2736 - MarR family transcriptional regulator (RefSeq), at 3,233,472 to 3,233,948
_2736
Shew_2737: Shew_2737 - AraC family transcriptional regulator (RefSeq), at 3,234,151 to 3,234,939
_2737
Shew_2738: Shew_2738 - alkylhydroperoxidase (RefSeq), at 3,234,978 to 3,235,421
_2738
Shew_2739: Shew_2739 - Fmu (Sun) domain-containing protein (RefSeq), at 3,235,811 to 3,237,238
_2739
Position (kb)
3234
3235 Strain fitness (log2 ratio)
-1
0
1 at 3233.230 kb on - strand, within Shew_2735 at 3233.739 kb on + strand, within Shew_2736 at 3233.844 kb on - strand, within Shew_2736 at 3234.227 kb on + strand at 3234.913 kb on - strand at 3234.913 kb on - strand at 3234.986 kb on + strand at 3234.986 kb on + strand at 3234.986 kb on + strand at 3234.994 kb on - strand at 3234.994 kb on - strand at 3235.140 kb on - strand, within Shew_2738 at 3235.223 kb on + strand, within Shew_2738 at 3235.223 kb on + strand, within Shew_2738 at 3235.255 kb on - strand, within Shew_2738 at 3235.282 kb on - strand, within Shew_2738 at 3235.380 kb on + strand at 3235.475 kb on - strand at 3235.673 kb on - strand at 3235.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 3,233,230 - Shew_2735 0.79 -0.3 3,233,739 + Shew_2736 0.56 -0.1 3,233,844 - Shew_2736 0.78 -0.3 3,234,227 + -0.5 3,234,913 - -0.9 3,234,913 - +0.1 3,234,986 + +0.2 3,234,986 + +0.5 3,234,986 + -0.1 3,234,994 - +0.1 3,234,994 - -0.2 3,235,140 - Shew_2738 0.36 -0.3 3,235,223 + Shew_2738 0.55 -0.1 3,235,223 + Shew_2738 0.55 +0.2 3,235,255 - Shew_2738 0.62 +0.9 3,235,282 - Shew_2738 0.68 +0.3 3,235,380 + -0.3 3,235,475 - +0.3 3,235,673 - -0.1 3,235,796 - -1.1
Or see this region's nucleotide sequence