Strain Fitness in Shewanella loihica PV-4 around Shew_2462
Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.0625 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,895,111 | + | Shew_2461 | 0.65 | -0.3 | |
| 2,895,392 | + | Shew_2461 | 0.77 | +1.0 | |
| 2,895,718 | + | +0.2 | |||
| 2,895,725 | + | +0.3 | |||
| 2,895,880 | + | +0.1 | |||
| 2,895,886 | + | +0.9 | |||
| 2,895,937 | - | -0.2 | |||
| 2,896,160 | - | +0.1 | |||
| 2,896,483 | + | Shew_2462 | 0.23 | +0.7 | |
| 2,896,650 | - | Shew_2462 | 0.33 | +1.8 | |
| 2,896,734 | + | Shew_2462 | 0.37 | -2.5 | |
| 2,896,742 | - | Shew_2462 | 0.38 | +0.4 | |
| 2,896,768 | - | Shew_2462 | 0.39 | +0.5 | |
| 2,896,913 | + | Shew_2462 | 0.47 | -0.1 | |
| 2,897,010 | - | Shew_2462 | 0.52 | -0.1 | |
| 2,897,218 | + | Shew_2462 | 0.64 | +0.2 | |
| 2,897,440 | + | Shew_2462 | 0.76 | +1.0 | |
| 2,897,515 | + | Shew_2462 | 0.80 | -0.4 | |
| 2,897,654 | - | Shew_2462 | 0.88 | -1.7 | |
| 2,897,992 | + | -0.0 | |||
| 2,898,167 | + | Shew_2463 | 0.12 | +0.7 | |
| 2,898,167 | + | Shew_2463 | 0.12 | +1.1 | |
| 2,898,365 | - | Shew_2463 | 0.21 | +0.3 |
Or see this region's nucleotide sequence