Strain Fitness in Shewanella loihica PV-4 around Shew_2452

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2451 and Shew_2452 are separated by 103 nucleotidesShew_2452 and Shew_2453 are separated by 316 nucleotidesShew_2453 and Shew_2454 are separated by 75 nucleotides Shew_2451: Shew_2451 - patatin (RefSeq), at 2,881,033 to 2,882,064 _2451 Shew_2452: Shew_2452 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,882,168 to 2,883,550 _2452 Shew_2453: Shew_2453 - hypothetical protein (RefSeq), at 2,883,867 to 2,884,307 _2453 Shew_2454: Shew_2454 - hypothetical protein (RefSeq), at 2,884,383 to 2,884,889 _2454 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -1 0 1at 2881.957 kb on - strand, within Shew_2451at 2881.957 kb on - strand, within Shew_2451at 2882.069 kb on - strandat 2883.653 kb on - strandat 2884.195 kb on - strand, within Shew_2453

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,881,957 - Shew_2451 0.90 -0.8
2,881,957 - Shew_2451 0.90 +0.0
2,882,069 - -0.3
2,883,653 - +0.2
2,884,195 - Shew_2453 0.74 +0.6

Or see this region's nucleotide sequence