Strain Fitness in Shewanella loihica PV-4 around Shew_1774

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1773 and Shew_1774 are separated by 301 nucleotidesShew_1774 and Shew_1775 are separated by 173 nucleotidesShew_1775 and Shew_1776 overlap by 1 nucleotides Shew_1773: Shew_1773 - LysR family transcriptional regulator (RefSeq), at 2,027,904 to 2,028,824 _1773 Shew_1774: Shew_1774 - excinuclease ATPase subunit (RefSeq), at 2,029,126 to 2,029,623 _1774 Shew_1775: Shew_1775 - acetolactate synthase 3 regulatory subunit (RefSeq), at 2,029,797 to 2,030,291 _1775 Shew_1776: Shew_1776 - acetolactate synthase 3 catalytic subunit (RefSeq), at 2,030,291 to 2,032,012 _1776 Position (kb) 2029 2030Strain fitness (log2 ratio) -1 0 1at 2028.634 kb on + strand, within Shew_1773at 2028.962 kb on + strandat 2029.290 kb on + strand, within Shew_1774at 2029.298 kb on - strand, within Shew_1774at 2029.841 kb on - strandat 2029.922 kb on + strand, within Shew_1775at 2030.173 kb on - strand, within Shew_1775at 2030.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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2,028,634 + Shew_1773 0.79 +0.4
2,028,962 + +0.1
2,029,290 + Shew_1774 0.33 -1.0
2,029,298 - Shew_1774 0.35 -0.3
2,029,841 - +0.5
2,029,922 + Shew_1775 0.25 +0.2
2,030,173 - Shew_1775 0.76 -0.4
2,030,360 - -0.2

Or see this region's nucleotide sequence