Strain Fitness in Shewanella loihica PV-4 around Shew_1658

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsucC and Shew_1658 overlap by 1 nucleotidesShew_1658 and Shew_1659 are separated by 85 nucleotides Shew_1657: sucC - succinyl-CoA synthetase subunit beta (RefSeq), at 1,906,416 to 1,907,582 sucC Shew_1658: Shew_1658 - succinyl-CoA synthetase, alpha subunit (RefSeq), at 1,907,582 to 1,908,454 _1658 Shew_1659: Shew_1659 - ferredoxin-dependent glutamate synthase (RefSeq), at 1,908,540 to 1,910,213 _1659 Position (kb) 1907 1908 1909Strain fitness (log2 ratio) -1 0 1 2 3at 1907.247 kb on - strand, within sucCat 1907.442 kb on - strand, within sucCat 1909.085 kb on + strand, within Shew_1659

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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1,907,247 - sucC Shew_1657 0.71 +2.9
1,907,442 - sucC Shew_1657 0.88 +3.3
1,909,085 + Shew_1659 0.33 +0.2

Or see this region's nucleotide sequence