Strain Fitness in Shewanella loihica PV-4 around Shew_1109

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
1,277,889	-				+0.2
1,277,931	+				+0.6
1,277,939	-				+1.0
1,277,962	+				+0.2
1,277,967	+				+0.0
1,277,967	+				+0.4
1,277,967	+				+0.2
1,277,967	+				-0.6
1,277,967	+				+0.2
1,277,967	+				+0.2
1,277,970	-				+0.1
1,277,975	-				+0.3
1,277,975	-				+0.3
1,277,975	-				+1.0
1,277,975	-				-0.5
1,277,975	-				+0.4
1,277,995	+				+0.1
1,278,003	-				+0.0
1,278,003	-				-0.3
1,278,003	-				-0.5
1,278,003	-				-0.1
1,278,142	+				+0.5
1,278,150	-				+0.6
1,278,152	+				+0.5
1,278,152	+				-0.5
1,278,152	+				-0.7
1,278,162	+				+0.3
1,278,162	+				-0.6
1,278,165	-				+4.2
1,278,171	+				+0.2
1,278,227	+				+0.0
1,278,294	+				+0.7
1,278,294	+				+0.4
1,278,297	-				+0.2
1,278,297	-				+0.6
1,278,309	+		Shew_1108	0.10	+0.0
1,278,391	+		Shew_1108	0.27	+1.1
1,278,403	+		Shew_1108	0.29	-0.3
1,278,403	+		Shew_1108	0.29	+1.4
1,278,411	-		Shew_1108	0.31	+0.4
1,278,441	+		Shew_1108	0.37	+0.1
1,278,449	-		Shew_1108	0.39	-0.0
1,278,491	-		Shew_1108	0.47	-1.8
1,278,497	-		Shew_1108	0.48	+0.6
1,278,536	-		Shew_1108	0.56	+0.6
1,278,545	+		Shew_1108	0.58	-0.3
1,278,612	-		Shew_1108	0.72	+0.0
1,278,615	+		Shew_1108	0.72	+0.5
1,278,615	+		Shew_1108	0.72	-0.5
1,278,615	+		Shew_1108	0.72	-0.7
1,278,615	+		Shew_1108	0.72	+0.4
1,278,615	+		Shew_1108	0.72	+0.4
1,278,623	-		Shew_1108	0.74	+0.2
1,278,623	-		Shew_1108	0.74	-0.7
1,278,623	-		Shew_1108	0.74	+0.4
1,278,623	-		Shew_1108	0.74	+0.2
1,278,623	-		Shew_1108	0.74	+0.0
1,278,669	+		Shew_1108	0.83	+1.1
1,278,677	-		Shew_1108	0.85	+0.1
1,278,707	+				-0.1
1,278,731	-				+0.1
1,278,783	-				+0.9
1,278,868	+				+0.5
1,278,869	-				-0.7
1,278,876	+				+0.3
1,278,876	-				+0.1
1,278,884	-				+0.3
1,278,884	-				+0.1
1,278,884	-				+0.8
1,278,886	+				-1.7
1,278,886	+				+0.2
1,278,894	-				+0.4
1,278,979	+		Shew_1109	0.18	+0.3
1,278,979	+		Shew_1109	0.18	+0.2
1,278,979	+		Shew_1109	0.18	+0.6
1,278,979	+		Shew_1109	0.18	+0.5
1,278,979	+		Shew_1109	0.18	-0.2
1,278,979	+		Shew_1109	0.18	-0.1
1,278,984	+		Shew_1109	0.19	-0.3
1,278,987	-		Shew_1109	0.19	+0.0
1,278,987	-		Shew_1109	0.19	+0.4
1,278,987	-		Shew_1109	0.19	-3.3
1,278,987	-		Shew_1109	0.19	+0.7
1,278,987	-		Shew_1109	0.19	+0.4
1,278,991	+		Shew_1109	0.20	+0.8
1,278,991	+		Shew_1109	0.20	+0.5
1,278,991	+		Shew_1109	0.20	+0.6
1,278,992	+		Shew_1109	0.20	-0.0
1,278,999	-		Shew_1109	0.22	+0.1
1,278,999	-		Shew_1109	0.22	+0.6
1,278,999	-		Shew_1109	0.22	-0.1
1,279,022	-		Shew_1109	0.26	+0.5
1,279,204	+		Shew_1109	0.62	+0.6
1,279,210	+		Shew_1109	0.63	-0.3
1,279,212	-		Shew_1109	0.63	+0.4
1,279,218	-		Shew_1109	0.65	+0.6
1,279,295	-		Shew_1109	0.80	+0.4
1,279,301	-		Shew_1109	0.81	+0.7
1,279,301	-		Shew_1109	0.81	+0.3
1,279,334	+		Shew_1109	0.87	+0.0
1,279,334	+		Shew_1109	0.87	+0.0
1,279,334	+		Shew_1109	0.87	+0.1
1,279,342	-		Shew_1109	0.89	+0.3
1,279,342	-		Shew_1109	0.89	-0.1
1,279,344	+		Shew_1109	0.89	-0.3
1,279,407	-				+0.3
1,279,414	-				+0.5
1,279,414	+				+0.9
1,279,424	-				-0.1
1,279,428	-				+0.6
1,279,428	-				-0.7
1,279,428	-				-0.0
1,279,434	+				+0.1
1,279,444	+				+0.2
1,279,447	-				+0.5
1,279,472	+				+0.5
1,279,480	-				+0.4
1,279,480	-				+0.4
1,279,480	-				-0.1
1,279,480	-				+0.1
1,279,480	-				-0.3
1,279,491	+				+0.4
1,279,517	-				+0.6
1,279,517	-				+1.1
1,279,590	-				+0.2
1,279,666	-				+0.4
1,279,677	-				-0.9
1,279,702	+		Shew_1110	0.15	+0.1
1,279,789	-		Shew_1110	0.41	-0.3
1,279,906	-		Shew_1110	0.76	+0.7
1,280,137	+				+0.5
1,280,225	+		Shew_1111	0.15	+4.0
1,280,233	-		Shew_1111	0.16	+0.4
1,280,235	+		Shew_1111	0.16	+0.2
1,280,382	-		Shew_1111	0.30	+0.1