Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4193

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4191 and Dshi_4192 are separated by 92 nucleotidesDshi_4192 and Dshi_4193 overlap by 4 nucleotidesDshi_4193 and Dshi_4194 are separated by 20 nucleotides Dshi_4191: Dshi_4191 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 37,297 to 38,292 _4191 Dshi_4192: Dshi_4192 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 38,385 to 38,972 _4192 Dshi_4193: Dshi_4193 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 38,969 to 40,258 _4193 Dshi_4194: Dshi_4194 - Gamma-glutamyltransferase (RefSeq), at 40,279 to 41,874 _4194 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -1 0 1 2at 38.008 kb on + strand, within Dshi_4191at 38.041 kb on - strand, within Dshi_4191at 38.059 kb on - strand, within Dshi_4191at 38.066 kb on + strand, within Dshi_4191at 38.401 kb on - strandat 38.849 kb on + strand, within Dshi_4192at 38.849 kb on + strand, within Dshi_4192at 38.857 kb on - strand, within Dshi_4192at 38.898 kb on + strand, within Dshi_4192at 39.196 kb on - strand, within Dshi_4193at 39.257 kb on + strand, within Dshi_4193at 39.448 kb on + strand, within Dshi_4193at 39.721 kb on - strand, within Dshi_4193at 39.915 kb on - strand, within Dshi_4193at 40.101 kb on + strand, within Dshi_4193at 40.275 kb on - strandat 40.561 kb on + strand, within Dshi_4194at 40.791 kb on + strand, within Dshi_4194

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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38,008 + Dshi_4191 0.71 +0.2
38,041 - Dshi_4191 0.75 -1.4
38,059 - Dshi_4191 0.77 +0.2
38,066 + Dshi_4191 0.77 -0.3
38,401 - +0.1
38,849 + Dshi_4192 0.79 +0.4
38,849 + Dshi_4192 0.79 -0.8
38,857 - Dshi_4192 0.80 -0.9
38,898 + Dshi_4192 0.87 +0.1
39,196 - Dshi_4193 0.18 -0.1
39,257 + Dshi_4193 0.22 +0.1
39,448 + Dshi_4193 0.37 +0.1
39,721 - Dshi_4193 0.58 +0.8
39,915 - Dshi_4193 0.73 +1.8
40,101 + Dshi_4193 0.88 +0.0
40,275 - +0.1
40,561 + Dshi_4194 0.18 -0.2
40,791 + Dshi_4194 0.32 +0.7

Or see this region's nucleotide sequence