Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1792 and Dshi_1793 are separated by 62 nucleotides Dshi_1793 and Dshi_1794 are separated by 1 nucleotides Dshi_1794 and Dshi_1795 are separated by 193 nucleotides
Dshi_1792: Dshi_1792 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,665 to 1,863,276
_1792
Dshi_1793: Dshi_1793 - Xanthine phosphoribosyltransferase (RefSeq), at 1,863,339 to 1,863,842
_1793
Dshi_1794: Dshi_1794 - aminotransferase class I and II (RefSeq), at 1,863,844 to 1,865,025
_1794
Dshi_1795: Dshi_1795 - putative peptidyl-prolyl cis-trans isomerse D (RefSeq), at 1,865,219 to 1,867,063
_1795
Position (kb)
1863
1864
1865
1866 Strain fitness (log2 ratio)
-1
0
1 at 1863.005 kb on + strand, within Dshi_1792 at 1863.092 kb on + strand, within Dshi_1792 at 1863.182 kb on + strand, within Dshi_1792 at 1863.190 kb on - strand, within Dshi_1792 at 1863.193 kb on + strand, within Dshi_1792 at 1863.238 kb on + strand at 1863.567 kb on - strand, within Dshi_1793 at 1863.736 kb on - strand, within Dshi_1793 at 1863.740 kb on + strand, within Dshi_1793 at 1863.742 kb on - strand, within Dshi_1793 at 1863.795 kb on + strand at 1863.803 kb on - strand at 1863.979 kb on - strand, within Dshi_1794 at 1864.034 kb on - strand, within Dshi_1794 at 1864.164 kb on - strand, within Dshi_1794 at 1864.270 kb on - strand, within Dshi_1794 at 1864.354 kb on + strand, within Dshi_1794 at 1864.402 kb on - strand, within Dshi_1794 at 1864.584 kb on + strand, within Dshi_1794 at 1864.753 kb on + strand, within Dshi_1794 at 1864.767 kb on + strand, within Dshi_1794
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,863,005 + Dshi_1792 0.56 +0.9 1,863,092 + Dshi_1792 0.70 -0.8 1,863,182 + Dshi_1792 0.84 -1.1 1,863,190 - Dshi_1792 0.86 +0.5 1,863,193 + Dshi_1792 0.86 +0.4 1,863,238 + +0.9 1,863,567 - Dshi_1793 0.45 -0.1 1,863,736 - Dshi_1793 0.79 +0.3 1,863,740 + Dshi_1793 0.80 +1.6 1,863,742 - Dshi_1793 0.80 +0.1 1,863,795 + +0.1 1,863,803 - -0.1 1,863,979 - Dshi_1794 0.11 -0.6 1,864,034 - Dshi_1794 0.16 +0.0 1,864,164 - Dshi_1794 0.27 +1.3 1,864,270 - Dshi_1794 0.36 +0.7 1,864,354 + Dshi_1794 0.43 +0.3 1,864,402 - Dshi_1794 0.47 +0.1 1,864,584 + Dshi_1794 0.63 -0.7 1,864,753 + Dshi_1794 0.77 +0.3 1,864,767 + Dshi_1794 0.78 -0.1
Or see this region's nucleotide sequence