Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0943 and Dshi_0944 are separated by 353 nucleotides Dshi_0944 and Dshi_0945 overlap by 4 nucleotides Dshi_0945 and Dshi_0946 are separated by 283 nucleotides Dshi_0946 and Dshi_0947 are separated by 57 nucleotides
Dshi_0943: Dshi_0943 - Abortive infection protein (RefSeq), at 968,525 to 969,388
_0943
Dshi_0944: Dshi_0944 - hypothetical protein (RefSeq), at 969,742 to 970,260
_0944
Dshi_0945: Dshi_0945 - Peptidoglycan-binding domain 1 protein (RefSeq), at 970,257 to 971,039
_0945
Dshi_0946: Dshi_0946 - hypothetical protein (RefSeq), at 971,323 to 971,721
_0946
Dshi_0947: Dshi_0947 - Aminoacyl-tRNA hydrolase (RefSeq), at 971,779 to 972,486
_0947
Position (kb) 970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 969.294 kb on + strand, within Dshi_0943 at 969.348 kb on + strand at 969.356 kb on - strand at 969.391 kb on - strand at 969.391 kb on - strand at 969.391 kb on - strand at 969.397 kb on + strand at 969.422 kb on + strand at 969.422 kb on + strand at 969.422 kb on + strand at 969.430 kb on - strand at 969.430 kb on - strand at 969.485 kb on + strand at 969.585 kb on + strand at 969.609 kb on - strand at 969.688 kb on - strand at 969.700 kb on - strand at 969.848 kb on - strand, within Dshi_0944 at 969.850 kb on + strand, within Dshi_0944 at 969.860 kb on + strand, within Dshi_0944 at 969.909 kb on - strand, within Dshi_0944 at 969.964 kb on + strand, within Dshi_0944 at 970.025 kb on + strand, within Dshi_0944 at 970.025 kb on + strand, within Dshi_0944 at 970.025 kb on + strand, within Dshi_0944 at 970.025 kb on + strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.033 kb on - strand, within Dshi_0944 at 970.038 kb on - strand, within Dshi_0944 at 970.038 kb on - strand, within Dshi_0944 at 970.158 kb on - strand, within Dshi_0944 at 970.158 kb on - strand, within Dshi_0944 at 970.210 kb on - strand at 970.215 kb on + strand at 970.235 kb on + strand at 970.356 kb on + strand, within Dshi_0945 at 970.358 kb on + strand, within Dshi_0945 at 970.454 kb on + strand, within Dshi_0945 at 970.466 kb on + strand, within Dshi_0945 at 970.474 kb on - strand, within Dshi_0945 at 970.485 kb on - strand, within Dshi_0945 at 970.493 kb on - strand, within Dshi_0945 at 970.496 kb on + strand, within Dshi_0945 at 970.585 kb on - strand, within Dshi_0945 at 970.661 kb on + strand, within Dshi_0945 at 970.670 kb on - strand, within Dshi_0945 at 970.749 kb on + strand, within Dshi_0945 at 970.759 kb on + strand, within Dshi_0945 at 970.766 kb on - strand, within Dshi_0945 at 970.767 kb on - strand, within Dshi_0945 at 970.796 kb on + strand, within Dshi_0945 at 970.847 kb on + strand, within Dshi_0945 at 970.886 kb on + strand, within Dshi_0945 at 970.886 kb on + strand, within Dshi_0945 at 970.913 kb on + strand, within Dshi_0945 at 970.919 kb on - strand, within Dshi_0945 at 970.921 kb on - strand, within Dshi_0945 at 970.921 kb on - strand, within Dshi_0945 at 970.926 kb on - strand, within Dshi_0945 at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.968 kb on + strand at 970.973 kb on + strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.976 kb on - strand at 970.981 kb on - strand at 970.987 kb on - strand at 970.987 kb on - strand at 970.987 kb on - strand at 970.994 kb on + strand at 970.994 kb on + strand at 971.002 kb on - strand at 971.002 kb on - strand at 971.002 kb on - strand at 971.003 kb on - strand at 971.004 kb on - strand at 971.009 kb on - strand at 971.024 kb on - strand at 971.024 kb on - strand at 971.028 kb on + strand at 971.042 kb on - strand at 971.111 kb on + strand at 971.111 kb on + strand at 971.111 kb on + strand at 971.115 kb on + strand at 971.115 kb on + strand at 971.115 kb on + strand at 971.115 kb on + strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.119 kb on - strand at 971.123 kb on - strand at 971.123 kb on - strand at 971.124 kb on - strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.125 kb on + strand at 971.133 kb on - strand at 971.133 kb on - strand at 971.138 kb on + strand at 971.142 kb on + strand at 971.145 kb on - strand at 971.152 kb on + strand at 971.161 kb on + strand at 971.167 kb on + strand at 971.193 kb on + strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.210 kb on - strand at 971.258 kb on + strand at 971.329 kb on + strand at 971.349 kb on + strand at 971.351 kb on + strand at 971.359 kb on - strand at 971.361 kb on + strand at 971.361 kb on + strand at 971.369 kb on - strand, within Dshi_0946 at 971.369 kb on - strand, within Dshi_0946 at 971.369 kb on - strand, within Dshi_0946 at 971.427 kb on - strand, within Dshi_0946 at 971.434 kb on + strand, within Dshi_0946 at 971.437 kb on - strand, within Dshi_0946 at 971.441 kb on + strand, within Dshi_0946 at 971.447 kb on - strand, within Dshi_0946 at 971.450 kb on + strand, within Dshi_0946 at 971.451 kb on + strand, within Dshi_0946 at 971.451 kb on + strand, within Dshi_0946 at 971.455 kb on + strand, within Dshi_0946 at 971.458 kb on - strand, within Dshi_0946 at 971.459 kb on - strand, within Dshi_0946 at 971.462 kb on + strand, within Dshi_0946 at 971.472 kb on + strand, within Dshi_0946 at 971.476 kb on + strand, within Dshi_0946 at 971.483 kb on + strand, within Dshi_0946 at 971.484 kb on - strand, within Dshi_0946 at 971.484 kb on - strand, within Dshi_0946 at 971.491 kb on - strand, within Dshi_0946 at 971.514 kb on - strand, within Dshi_0946 at 971.531 kb on - strand, within Dshi_0946 at 971.575 kb on + strand, within Dshi_0946 at 971.577 kb on + strand, within Dshi_0946 at 971.577 kb on + strand, within Dshi_0946 at 971.577 kb on + strand, within Dshi_0946 at 971.581 kb on - strand, within Dshi_0946 at 971.587 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.589 kb on + strand, within Dshi_0946 at 971.594 kb on + strand, within Dshi_0946 at 971.594 kb on + strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.597 kb on - strand, within Dshi_0946 at 971.599 kb on + strand, within Dshi_0946 at 971.600 kb on + strand, within Dshi_0946 at 971.600 kb on + strand, within Dshi_0946 at 971.608 kb on - strand, within Dshi_0946 at 971.608 kb on - strand, within Dshi_0946 at 971.609 kb on - strand, within Dshi_0946 at 971.658 kb on + strand, within Dshi_0946 at 971.663 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.668 kb on + strand, within Dshi_0946 at 971.671 kb on - strand, within Dshi_0946 at 971.673 kb on + strand, within Dshi_0946 at 971.691 kb on - strand at 971.738 kb on - strand at 971.770 kb on + strand at 971.778 kb on - strand at 971.788 kb on - strand at 971.903 kb on - strand, within Dshi_0947
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 969,294 + Dshi_0943 0.89 +1.5 969,348 + -0.2 969,356 - +0.5 969,391 - +0.4 969,391 - +0.5 969,391 - +0.5 969,397 + +0.2 969,422 + +0.2 969,422 + +0.6 969,422 + +0.3 969,430 - +0.8 969,430 - +1.5 969,485 + +0.0 969,585 + -1.0 969,609 - -0.0 969,688 - -1.2 969,700 - +0.3 969,848 - Dshi_0944 0.20 +0.8 969,850 + Dshi_0944 0.21 -0.0 969,860 + Dshi_0944 0.23 -0.0 969,909 - Dshi_0944 0.32 +0.4 969,964 + Dshi_0944 0.43 -0.2 970,025 + Dshi_0944 0.55 +0.3 970,025 + Dshi_0944 0.55 +0.7 970,025 + Dshi_0944 0.55 +0.1 970,025 + Dshi_0944 0.55 +0.6 970,033 - Dshi_0944 0.56 +0.1 970,033 - Dshi_0944 0.56 -0.0 970,033 - Dshi_0944 0.56 +1.1 970,033 - Dshi_0944 0.56 -0.0 970,033 - Dshi_0944 0.56 +0.5 970,033 - Dshi_0944 0.56 -0.1 970,033 - Dshi_0944 0.56 +1.3 970,033 - Dshi_0944 0.56 +0.6 970,033 - Dshi_0944 0.56 +0.7 970,038 - Dshi_0944 0.57 -0.2 970,038 - Dshi_0944 0.57 -0.1 970,158 - Dshi_0944 0.80 -0.2 970,158 - Dshi_0944 0.80 +1.1 970,210 - +0.0 970,215 + -1.2 970,235 + +0.8 970,356 + Dshi_0945 0.13 +1.6 970,358 + Dshi_0945 0.13 +0.8 970,454 + Dshi_0945 0.25 -1.8 970,466 + Dshi_0945 0.27 -0.2 970,474 - Dshi_0945 0.28 +0.8 970,485 - Dshi_0945 0.29 -0.7 970,493 - Dshi_0945 0.30 -0.9 970,496 + Dshi_0945 0.31 -0.6 970,585 - Dshi_0945 0.42 -0.7 970,661 + Dshi_0945 0.52 +0.1 970,670 - Dshi_0945 0.53 -2.0 970,749 + Dshi_0945 0.63 -1.2 970,759 + Dshi_0945 0.64 +0.5 970,766 - Dshi_0945 0.65 +0.3 970,767 - Dshi_0945 0.65 +0.1 970,796 + Dshi_0945 0.69 -0.3 970,847 + Dshi_0945 0.75 -1.7 970,886 + Dshi_0945 0.80 -0.2 970,886 + Dshi_0945 0.80 -0.5 970,913 + Dshi_0945 0.84 -1.0 970,919 - Dshi_0945 0.85 +0.8 970,921 - Dshi_0945 0.85 -2.0 970,921 - Dshi_0945 0.85 -0.5 970,926 - Dshi_0945 0.85 -1.8 970,968 + +0.2 970,968 + -0.8 970,968 + -0.7 970,968 + -0.6 970,968 + -0.7 970,968 + +0.3 970,973 + -0.5 970,976 - -0.8 970,976 - -0.8 970,976 - +0.0 970,976 - +0.2 970,976 - +0.2 970,976 - +0.4 970,976 - +1.3 970,976 - -0.8 970,976 - -1.2 970,976 - -0.7 970,976 - -1.0 970,981 - -1.6 970,987 - -1.9 970,987 - -0.9 970,987 - -0.4 970,994 + -0.6 970,994 + -1.2 971,002 - +0.0 971,002 - +0.2 971,002 - -0.4 971,003 - -0.7 971,004 - -0.0 971,009 - +0.4 971,024 - +1.8 971,024 - -0.8 971,028 + +0.7 971,042 - +0.8 971,111 + -2.1 971,111 + -0.9 971,111 + +0.3 971,115 + +0.6 971,115 + +1.0 971,115 + +0.5 971,115 + -0.5 971,119 - -0.4 971,119 - -0.6 971,119 - -0.1 971,119 - -0.7 971,119 - -0.7 971,123 - +0.7 971,123 - +0.8 971,124 - +0.2 971,125 + +0.0 971,125 + -2.2 971,125 + +2.1 971,125 + +1.3 971,125 + -1.3 971,125 + +0.4 971,125 + -0.0 971,125 + -0.8 971,133 - -1.6 971,133 - -0.6 971,138 + -0.7 971,142 + -0.2 971,145 - +0.1 971,152 + +0.4 971,161 + -0.8 971,167 + -0.3 971,193 + +0.0 971,210 - +0.3 971,210 - -0.9 971,210 - -0.2 971,210 - -0.2 971,210 - -0.2 971,258 + -2.8 971,329 + -0.2 971,349 + -1.4 971,351 + -1.8 971,359 - -1.1 971,361 + +0.2 971,361 + +1.5 971,369 - Dshi_0946 0.12 -0.1 971,369 - Dshi_0946 0.12 +0.2 971,369 - Dshi_0946 0.12 -0.2 971,427 - Dshi_0946 0.26 -0.2 971,434 + Dshi_0946 0.28 +0.1 971,437 - Dshi_0946 0.29 +0.8 971,441 + Dshi_0946 0.30 +0.4 971,447 - Dshi_0946 0.31 +0.8 971,450 + Dshi_0946 0.32 -0.1 971,451 + Dshi_0946 0.32 +1.0 971,451 + Dshi_0946 0.32 -0.7 971,455 + Dshi_0946 0.33 +1.0 971,458 - Dshi_0946 0.34 +0.0 971,459 - Dshi_0946 0.34 -0.1 971,462 + Dshi_0946 0.35 -0.4 971,472 + Dshi_0946 0.37 -0.2 971,476 + Dshi_0946 0.38 -0.3 971,483 + Dshi_0946 0.40 -0.7 971,484 - Dshi_0946 0.40 +0.1 971,484 - Dshi_0946 0.40 -0.5 971,491 - Dshi_0946 0.42 -0.7 971,514 - Dshi_0946 0.48 -0.8 971,531 - Dshi_0946 0.52 -0.6 971,575 + Dshi_0946 0.63 -0.5 971,577 + Dshi_0946 0.64 +0.5 971,577 + Dshi_0946 0.64 -1.6 971,577 + Dshi_0946 0.64 -0.5 971,581 - Dshi_0946 0.65 +0.6 971,587 + Dshi_0946 0.66 +1.0 971,589 + Dshi_0946 0.67 +0.8 971,589 + Dshi_0946 0.67 -1.2 971,589 + Dshi_0946 0.67 +0.2 971,589 + Dshi_0946 0.67 -0.2 971,594 + Dshi_0946 0.68 +1.1 971,594 + Dshi_0946 0.68 -0.2 971,597 - Dshi_0946 0.69 -0.2 971,597 - Dshi_0946 0.69 -1.0 971,597 - Dshi_0946 0.69 -0.1 971,597 - Dshi_0946 0.69 +1.3 971,597 - Dshi_0946 0.69 -0.1 971,599 + Dshi_0946 0.69 +0.3 971,600 + Dshi_0946 0.69 +0.1 971,600 + Dshi_0946 0.69 -0.8 971,608 - Dshi_0946 0.71 +0.8 971,608 - Dshi_0946 0.71 +1.1 971,609 - Dshi_0946 0.72 +0.2 971,658 + Dshi_0946 0.84 -0.3 971,663 + Dshi_0946 0.85 +0.8 971,668 + Dshi_0946 0.86 +1.3 971,668 + Dshi_0946 0.86 +0.0 971,668 + Dshi_0946 0.86 -0.2 971,668 + Dshi_0946 0.86 +0.2 971,668 + Dshi_0946 0.86 -0.2 971,671 - Dshi_0946 0.87 -0.4 971,673 + Dshi_0946 0.88 +0.2 971,691 - +0.7 971,738 - +1.7 971,770 + +0.2 971,778 - +0.5 971,788 - +0.8 971,903 - Dshi_0947 0.18 -0.5
Or see this region's nucleotide sequence