Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3724 and Rru_A3725 overlap by 8 nucleotides Rru_A3725 and Rru_A3726 overlap by 4 nucleotides Rru_A3726 and Rru_A3727 overlap by 4 nucleotides
Rru_A3724: Rru_A3724 - ABC transporter component (NCBI), at 4,276,384 to 4,277,166
_A3724
Rru_A3725: Rru_A3725 - ABC transporter component (NCBI), at 4,277,159 to 4,277,899
_A3725
Rru_A3726: Rru_A3726 - inner-membrane translocator (NCBI), at 4,277,896 to 4,278,798
_A3726
Rru_A3727: Rru_A3727 - inner-membrane translocator (NCBI), at 4,278,795 to 4,279,799
_A3727
Position (kb) 4277
4278 Strain fitness (log2 ratio) -2
-1
0
1 at 4276.216 kb on - strand at 4276.216 kb on - strand at 4276.252 kb on - strand at 4276.434 kb on + strand at 4276.434 kb on + strand at 4276.435 kb on - strand at 4276.435 kb on - strand at 4276.435 kb on - strand at 4276.435 kb on - strand at 4276.951 kb on - strand, within Rru_A3724 at 4276.951 kb on - strand, within Rru_A3724 at 4277.005 kb on + strand, within Rru_A3724 at 4277.005 kb on + strand, within Rru_A3724 at 4277.006 kb on - strand, within Rru_A3724 at 4277.006 kb on - strand, within Rru_A3724 at 4277.006 kb on - strand, within Rru_A3724 at 4277.150 kb on - strand at 4277.150 kb on - strand at 4277.220 kb on - strand at 4277.306 kb on - strand, within Rru_A3725 at 4277.306 kb on - strand, within Rru_A3725 at 4277.360 kb on - strand, within Rru_A3725 at 4277.801 kb on + strand, within Rru_A3725 at 4277.801 kb on + strand, within Rru_A3725 at 4277.802 kb on - strand, within Rru_A3725 at 4277.802 kb on - strand, within Rru_A3725 at 4277.879 kb on + strand at 4277.880 kb on - strand at 4277.880 kb on - strand at 4277.957 kb on - strand at 4277.957 kb on - strand at 4278.046 kb on + strand, within Rru_A3726 at 4278.047 kb on - strand, within Rru_A3726 at 4278.211 kb on + strand, within Rru_A3726 at 4278.211 kb on + strand, within Rru_A3726 at 4278.211 kb on + strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.212 kb on - strand, within Rru_A3726 at 4278.292 kb on + strand, within Rru_A3726 at 4278.292 kb on + strand, within Rru_A3726 at 4278.293 kb on - strand, within Rru_A3726 at 4278.293 kb on - strand, within Rru_A3726 at 4278.294 kb on + strand, within Rru_A3726 at 4278.295 kb on - strand, within Rru_A3726 at 4278.432 kb on + strand, within Rru_A3726 at 4278.647 kb on - strand, within Rru_A3726
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 4,276,216 - +0.0 4,276,216 - -1.0 4,276,252 - -1.4 4,276,434 + -1.1 4,276,434 + +0.0 4,276,435 - +0.0 4,276,435 - +0.0 4,276,435 - +0.0 4,276,435 - -0.6 4,276,951 - Rru_A3724 0.72 -1.2 4,276,951 - Rru_A3724 0.72 +0.0 4,277,005 + Rru_A3724 0.79 -1.5 4,277,005 + Rru_A3724 0.79 -1.5 4,277,006 - Rru_A3724 0.79 +0.0 4,277,006 - Rru_A3724 0.79 -1.9 4,277,006 - Rru_A3724 0.79 -1.3 4,277,150 - -2.0 4,277,150 - +0.0 4,277,220 - +0.0 4,277,306 - Rru_A3725 0.20 -0.9 4,277,306 - Rru_A3725 0.20 -1.0 4,277,360 - Rru_A3725 0.27 -0.6 4,277,801 + Rru_A3725 0.87 -1.0 4,277,801 + Rru_A3725 0.87 +0.0 4,277,802 - Rru_A3725 0.87 +0.0 4,277,802 - Rru_A3725 0.87 -2.6 4,277,879 + +0.0 4,277,880 - +0.0 4,277,880 - +0.0 4,277,957 - +0.0 4,277,957 - +0.0 4,278,046 + Rru_A3726 0.17 +0.0 4,278,047 - Rru_A3726 0.17 +0.0 4,278,211 + Rru_A3726 0.35 +0.0 4,278,211 + Rru_A3726 0.35 +0.0 4,278,211 + Rru_A3726 0.35 +0.0 4,278,212 - Rru_A3726 0.35 +0.0 4,278,212 - Rru_A3726 0.35 -1.9 4,278,212 - Rru_A3726 0.35 -1.6 4,278,212 - Rru_A3726 0.35 -1.0 4,278,212 - Rru_A3726 0.35 +0.0 4,278,212 - Rru_A3726 0.35 +0.0 4,278,212 - Rru_A3726 0.35 -1.2 4,278,212 - Rru_A3726 0.35 +0.0 4,278,212 - Rru_A3726 0.35 +0.0 4,278,212 - Rru_A3726 0.35 +0.0 4,278,292 + Rru_A3726 0.44 +0.0 4,278,292 + Rru_A3726 0.44 +0.0 4,278,293 - Rru_A3726 0.44 -1.3 4,278,293 - Rru_A3726 0.44 -1.3 4,278,294 + Rru_A3726 0.44 -1.8 4,278,295 - Rru_A3726 0.44 +0.0 4,278,432 + Rru_A3726 0.59 +0.0 4,278,647 - Rru_A3726 0.83 +0.0
Or see this region's nucleotide sequence